Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_J23
         (841 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    46   5e-07
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   1.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   1.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.3  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   2.3  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   5.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   5.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   7.0  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   9.2  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 45.6 bits (103), Expect = 5e-07
 Identities = 60/201 (29%), Positives = 88/201 (43%), Gaps = 2/201 (0%)
 Frame = +3

Query: 99  NNPEIDLVDKGISSLEEIPGLFSLENITRLSLSHNKISVVPXXXXXXXXXXXXXXXXXXX 278
           +N  I+LV       E+  GL  L+NI  L LS N I+ V                    
Sbjct: 199 HNKLINLVVAPSVPFEQDTGLGGLQNIKVLDLSFNNITSVAKQFFR-------------- 244

Query: 279 XXXPVSLSSLPKLRILNVSLNKLYNLPRG-FGSFPVLEILDLTYNNLNEKVLPGNFFIMD 455
              PV LS    L  L +  NKL N  +  FG+ P L++LDL++N+L E      F    
Sbjct: 245 ---PVELS----LMQLYLGHNKLLNATKDLFGNMPHLQVLDLSHNSLYELDF-DTFRNTK 296

Query: 456 SLRALYLGDNDFEFLPPEIGN-LKNLQILSMRENDLIEVPRELGQLARLRELHLQGNRLV 632
            L+ L    N    +P ++   L NL+I+    N L  +P  L +   L  L +  N L 
Sbjct: 297 KLQWLDTSHNRISEIPNDLFRFLGNLRIVDFSHNRLRSLPDNLFRETGLERLDVSHNLLG 356

Query: 633 VLPPEIGTLDLASNKSVLRLE 695
            LP  + +L LAS +++  L+
Sbjct: 357 KLP--LTSLSLASAQTLSELD 375



 Score = 45.2 bits (102), Expect = 7e-07
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
 Frame = +3

Query: 294 SLSSLPKLRILNVSLNKLYNLPRGFGSFPVLE--ILDLTYNNLNEKVLPGNFFIMDSLRA 467
           +   +P+L  LN+  N    L     SF  LE  +L L  +N++   +P       +L +
Sbjct: 413 TFKGIPRLASLNLGHNSQLTLEINGLSFQGLEYTLLHLNLDNVSLSQVPA--LSTPNLLS 470

Query: 468 LYLGDNDFEFLPPEI-GNLKNLQILSMRENDLIEVPRELGQLARLRELHLQGNRLVVL 638
           L L  N    +  E+ GN+ +L+ L++  NDL  VP     L  LR L L+GN +  L
Sbjct: 471 LSLAFNSLPTVALEVAGNISSLRYLNLDYNDLSAVPIVTHSLTELRHLSLEGNPITTL 528



 Score = 44.0 bits (99), Expect = 2e-06
 Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 19/200 (9%)
 Frame = +3

Query: 108 EIDLVDKGISSLEEIPGLFSLENITRLSLSHNKISVVPXXXXXXXXXXXXXXXXXXXXXX 287
           +I L D  I SLE      +L+++ RL+L  NKI+ +                       
Sbjct: 120 QIHLDDNRIESLER-RAFMNLKSLKRLNLKGNKIATIAYETFQNLPELEDLDLAYNSISS 178

Query: 288 PV-----SLSSLPKLRILNVSLNKLYNL----------PRGFGSFPVLEILDLTYNNLNE 422
                   + SL    + N+S NKL NL            G G    +++LDL++NN+  
Sbjct: 179 LDFNIFDQVGSLGMFHV-NMSHNKLINLVVAPSVPFEQDTGLGGLQNIKVLDLSFNNITS 237

Query: 423 KVLPGNFF--IMDSLRALYLGDNDFEFLPPEI-GNLKNLQILSMRENDLIEVPRE-LGQL 590
             +   FF  +  SL  LYLG N       ++ GN+ +LQ+L +  N L E+  +     
Sbjct: 238 --VAKQFFRPVELSLMQLYLGHNKLLNATKDLFGNMPHLQVLDLSHNSLYELDFDTFRNT 295

Query: 591 ARLRELHLQGNRLVVLPPEI 650
            +L+ L    NR+  +P ++
Sbjct: 296 KKLQWLDTSHNRISEIPNDL 315


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = -1

Query: 268 LAKFRISKLLKLASAAGTTEILLWLRDRRVMFSRENKPGISSR 140
           L +  I+  L+L+      ++ +W ++RRV + +E+ P  + +
Sbjct: 145 LRRIEIATCLRLSEK----QVKIWFQNRRVKYKKEDLPAAAGK 183


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -1

Query: 241 LKLASAAGTTE--ILLWLRDRRVMFSRENK 158
           +++A A   TE  I +W ++RR+ + +ENK
Sbjct: 273 IEIAHALCLTERQIKIWFQNRRMKWKKENK 302


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -1

Query: 241 LKLASAAGTTE--ILLWLRDRRVMFSRENK 158
           +++A A   TE  I +W ++RR+ + +ENK
Sbjct: 275 IEIAHALCLTERQIKIWFQNRRMKWKKENK 304


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 549  ENDLIEVPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGN 701
            END    P  +G+   +  L     R      +IGTLD+A  K   +L  N
Sbjct: 1402 ENDSGSGPDRIGRRKTIHNLE----RAAQKKRQIGTLDVAFKKRFAKLNAN 1448


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 549  ENDLIEVPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGN 701
            END    P  +G+   +  L     R      +IGTLD+A  K   +L  N
Sbjct: 1402 ENDSGSGPDRIGRRKTIHNLE----RAAQKKRQIGTLDVAFKKRFAKLNAN 1448


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 549  ENDLIEVPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGN 701
            END    P  +G+   +  L     R      +IGTLD+A  K   +L  N
Sbjct: 1402 ENDSGSGPDRIGRRKTIHNLE----RAAQKKRQIGTLDVAFKKRFAKLNAN 1448


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 549  ENDLIEVPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGN 701
            END    P  +G+   +  L     R      +IGTLD+A  K   +L  N
Sbjct: 1402 ENDSGSGPDRIGRRKTIHNLE----RAAQKKRQIGTLDVAFKKRFAKLNAN 1448


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 253 ISKLLKLASAAGTTE--ILLWLRDRRVMFSRENKPGISSRLDI 131
           I +  +LA   G +E  I +W ++RR    ++NK  I  +  I
Sbjct: 184 IKRKSELAENLGLSERQIKIWFQNRRAKERKQNKKRIEEKSQI 226


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -1

Query: 211 EILLWLRDRRVMFSRENK 158
           +I +W ++RR+ + ++NK
Sbjct: 276 QIKIWFQNRRMKWKKDNK 293


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 739 GRPTCWTIC 765
           G+PTCW  C
Sbjct: 881 GKPTCWREC 889


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -1

Query: 211 EILLWLRDRRVMFSRENK 158
           +I +W ++RR+ + ++NK
Sbjct: 276 QIKIWFQNRRMKWKKDNK 293


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 792 SRHMSAKPPPPPXTVD 839
           S   +A PPPPP  V+
Sbjct: 725 SMENNAPPPPPPPRVE 740


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +2

Query: 323 PQCFIKQTV*LAKRLWFLPC 382
           P C+I   + L    WF+ C
Sbjct: 217 PYCYINCLIYLIGGFWFMQC 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,534
Number of Sequences: 336
Number of extensions: 4225
Number of successful extensions: 25
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)