Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_J23
(841 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 69 1e-12
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 58 1e-09
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 49 7e-07
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 38 0.001
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 36 0.005
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 31 0.15
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 29 0.62
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 27 3.3
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces... 27 3.3
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S... 27 4.4
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 27 4.4
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 5.8
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 26 7.6
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 26 7.6
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 68.5 bits (160), Expect = 1e-12
Identities = 41/99 (41%), Positives = 54/99 (54%)
Frame = +3
Query: 438 NFFIMDSLRALYLGDNDFEFLPPEIGNLKNLQILSMRENDLIEVPRELGQLARLRELHLQ 617
+ F L LY+ N+ LPPEIG LKNL IL N + +P ELG L LRE+ L
Sbjct: 176 DLFKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLTELREVLLF 235
Query: 618 GNRLVVLPPEIGTLDLASNKSVLRLEGNFWVPPIEDQLK 734
N + V+P E+GTL +L +EGN P++D K
Sbjct: 236 DNMISVIPAELGTL---FQLKILGIEGN----PLQDVYK 267
Score = 46.4 bits (105), Expect = 5e-06
Identities = 30/95 (31%), Positives = 48/95 (50%)
Frame = +3
Query: 345 LYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIGNLK 524
L N+ F L L + +NNL LP + +L L N + +PPE+G L
Sbjct: 170 LRNVSTDLFKFSFLTELYINHNNLTR--LPPEIGKLKNLVILDASGNSIKTIPPELGLLT 227
Query: 525 NLQILSMRENDLIEVPRELGQLARLRELHLQGNRL 629
L+ + + +N + +P ELG L +L+ L ++GN L
Sbjct: 228 ELREVLLFDNMISVIPAELGTLFQLKILGIEGNPL 262
Score = 30.3 bits (65), Expect = 0.36
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 558 LIEVPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGN 701
L V +L + + L EL++ N L LPPEIG L N +L GN
Sbjct: 170 LRNVSTDLFKFSFLTELYINHNNLTRLPPEIGKL---KNLVILDASGN 214
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 58.4 bits (135), Expect = 1e-09
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 3/155 (1%)
Frame = +3
Query: 63 KLKKLFEEAKEINNPEIDLVDKGISSLEEIP--GLFSLEN-ITRLSLSHNKISVVPXXXX 233
+++++ +EA++ +D +L E+P L ++ I RL+L HN I +
Sbjct: 13 EIERIIKEAEDAGPENALTLDLSHLNLRELPYEQLERIQGRIARLALGHNFIKSIGPEIL 72
Query: 234 XXXXXXXXXXXXXXXXXXPVSLSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNN 413
P SL L L IL++S NK+ LP FG+ L++L ++ N
Sbjct: 73 KFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQLPESFGALMNLKVLSISKNR 132
Query: 414 LNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIGN 518
L E LP M +L L + +N F PP I N
Sbjct: 133 LFE--LPTYIAHMPNLEILKIENNHIVFPPPHIAN 165
Score = 57.2 bits (132), Expect = 3e-09
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Frame = +3
Query: 318 RILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVL---PGNFFIMDSLRALYLGDND 488
RI ++L +N + G +L+ L Y N+ VL P + ++SL L + N
Sbjct: 53 RIARLALG--HNFIKSIGP-EILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNK 109
Query: 489 FEFLPPEIGNLKNLQILSMRENDLIEVPRELGQLARLRELHLQGNRLVVLPPEIGTLDL 665
+ LP G L NL++LS+ +N L E+P + + L L ++ N +V PP I DL
Sbjct: 110 IKQLPESFGALMNLKVLSISKNRLFELPTYIAHMPNLEILKIENNHIVFPPPHIANNDL 168
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 49.2 bits (112), Expect = 7e-07
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Frame = +3
Query: 288 PVSLSSLPK--LRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSL 461
P+ S L + L+ LN++ NKL+ LP L LDL+YNN P + L
Sbjct: 493 PLIFSGLSRNSLKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNF--VTFPLIITELSQL 550
Query: 462 RALYLGDNDFEFLPPEIGNLKNLQILSMRENDLI-EVPRELGQLARLRELHLQGNRLVVL 638
L N + +IG+L L+ L ++ NDL +P+E+G L L + L N + +
Sbjct: 551 ETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDLSNRLPQEIGLLKNLETIDLSYNAITNI 610
Query: 639 P-----PEIGTLDLASN 674
P++ ++++A N
Sbjct: 611 ASLSECPKLNSINVACN 627
Score = 36.7 bits (81), Expect = 0.004
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Frame = +3
Query: 294 SLSSLPKLRILNVSLNKL----YNLPRGF---GSFPVLEILD--LTYNNL------NEKV 428
SLS PKL +NV+ N L Y+ P SF L +D +Y+NL + K+
Sbjct: 612 SLSECPKLNSINVACNLLSFYEYSNPSATFIDFSFCPLTTIDPAFSYSNLVYFDISHAKL 671
Query: 429 LPGNFFIMDSL---RALYLGDNDFEFLPPEIGNLKNLQILSMRENDLIEVPRELGQLARL 599
+ ++++L + + N F + I ++NL+ LS ++ V LG+L L
Sbjct: 672 IGLKDSVIETLVNVETVKVNYNHFTSISDAISAMQNLKYLSCTNCEMSYVSPNLGKLKHL 731
Query: 600 RELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGN 701
L L N + + P E+ + S+ V+ L N
Sbjct: 732 VHLDLHANNIKIFPEEVWQV---SSLKVVNLSSN 762
Score = 36.3 bits (80), Expect = 0.005
Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 9/188 (4%)
Frame = +3
Query: 93 EINNPEIDLVDKGISSLEEIPGLFSLENITRLSLSHNK-ISVVPXXXXXXXXXXXXXXXX 269
E +NP +D L I FS N+ +SH K I +
Sbjct: 633 EYSNPSATFIDFSFCPLTTIDPAFSYSNLVYFDISHAKLIGLKDSVIETLVNVETVKVNY 692
Query: 270 XXXXXXPVSLSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFI 449
++S++ L+ L+ + ++ + G L LDL NN+ K+ P +
Sbjct: 693 NHFTSISDAISAMQNLKYLSCTNCEMSYVSPNLGKLKHLVHLDLHANNI--KIFPEEVWQ 750
Query: 450 MDSLRALYLGDNDFEFLPPEIGNLKNL-----QILSMRE---NDLIEVPRELGQLARLRE 605
+ SL+ + L N E + + K L Q+ MR N + + + + + E
Sbjct: 751 VSSLKVVNLSSNILEKIKLPVATSKKLTRTISQLKIMRTLSGNPVSSLSSQEFVMPTVEE 810
Query: 606 LHLQGNRL 629
L+L NRL
Sbjct: 811 LYLVDNRL 818
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 38.3 bits (85), Expect = 0.001
Identities = 37/114 (32%), Positives = 50/114 (43%)
Frame = +3
Query: 297 LSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYL 476
+SSL L +L + NKL NL S P++ + L +N L + F LR LY+
Sbjct: 753 ISSLQNLMVLQLDNNKLTNLK---ASQPMIHLRILRISNNAIHQLEVDQF--PHLRTLYM 807
Query: 477 GDNDFEFLPPEIGNLKNLQILSMRENDLIEVPRELGQLARLRELHLQGNRLVVL 638
N F PP+I LK L S R D + +R L+L N V L
Sbjct: 808 DLNRFN-RPPDIRRLKRLVNFSFRTQDPEASNFVIQPSLDIRNLYLSNNTFVTL 860
Score = 33.9 bits (74), Expect = 0.029
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 3/168 (1%)
Frame = +3
Query: 129 GISSLEEIPGLFSLENITRLSLSHNKISVVPXXXXXXXXXXXXXXXXXXXXXXPVSLSSL 308
G + +EEI + SL+N+ L L +NK++ + +
Sbjct: 743 GNNEIEEIEEISSLQNLMVLQLDNNKLT---NLKASQPMIHLRILRISNNAIHQLEVDQF 799
Query: 309 PKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSL--RALYLGD 482
P LR L + LN+ +N P + +++ ++ + + NF I SL R LYL +
Sbjct: 800 PHLRTLYMDLNR-FNRPPDIRR--LKRLVNFSFRTQDPEA--SNFVIQPSLDIRNLYLSN 854
Query: 483 NDFEFLPPEIGNLKNLQILSMRENDLIEVPRELG-QLARLRELHLQGN 623
N F L + L ++ L + L EVP+ + + LR L L N
Sbjct: 855 NTFVTLDCKHMFL-GVRYLELANVQLKEVPKYIATSMPNLRVLDLSHN 901
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 36.3 bits (80), Expect = 0.005
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +3
Query: 381 VLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIGN-LKNLQILSMREND 557
V + +D T N++ GNF M L+ L G+N + P+IG L NL+ LS+ +N
Sbjct: 42 VHDAIDFTDNDIRYL---GNFPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNH 98
Query: 558 LIEVPRELGQLARLREL 608
L E+ +L LA +L
Sbjct: 99 LQEI-ADLDPLASCPQL 114
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +3
Query: 516 NLKNLQILSMRENDLIEVPRELGQLARLRELHLQGNRL 629
+L++L L + N+L E+P LG+L +L L+L N++
Sbjct: 354 SLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKI 391
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 29.5 bits (63), Expect = 0.62
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 208 ILLWLRDRRVMFSRENKPGISSRLDIPLSTKSI 110
IL W+ + MFSR+ P ++S L +P K I
Sbjct: 89 ILSWISPLKKMFSRKKSPTLTSSLPVPGMPKGI 121
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 468 KHGDCP**RSSQVILFHSNYCMLDPIS 388
+HG P SS ++ ++ NYC P+S
Sbjct: 210 EHGSSPLESSSGLVYYNRNYCSTSPLS 236
>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 298
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -1
Query: 391 ISSTGKEPKPLGKLYSLFNETLRILNLGSDDK 296
I STG++PK LGK Y E + I N+ D K
Sbjct: 208 IFSTGRQPKILGKPYDEMMEAI-IANVNFDRK 238
>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
L3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 326
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 333 SLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPG 437
S KL+++ + FG F VLE + Y L E+ + G
Sbjct: 81 SNEKLWSIGKVFGDFYVLEYIKCKYPRLPEEAVHG 115
>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 660 DLASNK-SVLRLEGNFWVPPIEDQLKLGPSHVL 755
+LA K ++L ++ F PPI+D L LG +V+
Sbjct: 175 ELAKKKGAILVVDSTFAPPPIQDALVLGADYVV 207
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 26.2 bits (55), Expect = 5.8
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = -1
Query: 562 IRSFSRIDKICRFFKFPISGGRNSKSLSPKYKARRLSIIKKFP-GNTFS---FKLLYVRS 395
+ S +DK+ K+ + + YK +R SI++KFP N S LL
Sbjct: 152 LNSLDNLDKV----KYLLHDSSSLTKAFDSYKEKRPSIVEKFPLHNLLSRWIHSLLIKSI 207
Query: 394 NISSTGKEPKPLGKLYSLFNETLRILN 314
+ + T K+ + L ++ N +L +L+
Sbjct: 208 SYAQTEKQEAKVTPLLAIINMSLVLLS 234
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.8 bits (54), Expect = 7.6
Identities = 19/80 (23%), Positives = 34/80 (42%)
Frame = +2
Query: 83 RSQRNK*SGNRFSRQRNI*SRRDSRLIFSGEHHSSVPKPQQNLCSACCTSQLEQLRNSKL 262
+S RN+ + FSR++N R + ++ S +Q L + S +E +
Sbjct: 189 KSSRNRRRESSFSREKNPDLTRSDSIHYTANTRLSEKFEEQGLAYSTIFSHIESFPITGS 248
Query: 263 GQ*QHSRASSQLIITTQVKD 322
+ L+ITT VK+
Sbjct: 249 TSFDSILGNGVLVITTLVKE 268
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 127 LSTKSISGLFISL-ASSNNFFSFRHLACVWN 38
+ST+ + L S+ A N FSF HL+ +WN
Sbjct: 285 ISTEEKTWLSQSVDADMNPVFSFEHLSFIWN 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,517,245
Number of Sequences: 5004
Number of extensions: 73762
Number of successful extensions: 260
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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