Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_J20
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022980-14|AAG24190.1|  332|Caenorhabditis elegans Serpentine r...    31   1.4  
AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine r...    31   1.4  
AF067608-15|AAO38679.1|  470|Caenorhabditis elegans Hypothetical...    30   2.4  
AC006767-1|AAF60573.2|  332|Caenorhabditis elegans Serpentine re...    29   4.2  
Z70268-1|CAA94217.1|  390|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine re...    28   7.3  
AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine re...    28   9.6  

>AF022980-14|AAG24190.1|  332|Caenorhabditis elegans Serpentine
           receptor, class j protein57 protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +3

Query: 441 IYLIFIYVVFSDQSLQRNHVIYFLTRNPEIFIFFF 545
           I+ I+ Y+V  + SL RN+  ++LT +  +F+ +F
Sbjct: 108 IHFIYRYLVIHNSSLTRNNFHWYLTISAFVFVLYF 142


>AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine
           receptor, class j protein44 protein.
          Length = 350

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 444 YLIFIYVVFSDQSLQRNHVIYFLTRNPEIFIFFFXV 551
           + I+ Y+V SD SL R+H  +F+T +  +   +F V
Sbjct: 112 HFIYRYLVISDSSLTRHHFHWFMTGSVYMLFAYFSV 147


>AF067608-15|AAO38679.1|  470|Caenorhabditis elegans Hypothetical
           protein B0511.14b protein.
          Length = 470

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 523 QKFSFFFFXYKNHISFFKKHLLFKICRSKFPPMVLTLES 639
           QK +F     K    F++ HLLF+ C  +F    LT+ES
Sbjct: 425 QKLTFMSLEIKKKTKFYQSHLLFRCCIREF----LTIES 459


>AC006767-1|AAF60573.2|  332|Caenorhabditis elegans Serpentine
           receptor, class j protein55 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 441 IYLIFIYVVFSDQSLQRNHVIYFLTRNPEIFIFFF 545
           I+ I+ Y+V  + SL R++  ++LT +  +F+ +F
Sbjct: 108 IHFIYRYLVIQNSSLTRHNFHWYLTISAVVFVVYF 142


>Z70268-1|CAA94217.1|  390|Caenorhabditis elegans Hypothetical
           protein T21E8.4 protein.
          Length = 390

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 775 RXPKSNASREIKIKDRLYSFSGVNY*RKTNFVKFGCDLIICDLYTN 638
           R  K+ A +++KI D+L S       R   F  FGC  +I  +Y+N
Sbjct: 24  RVEKTKAEKKMKILDKLLSRQAAKNQRHWQFEVFGCHEMI-GIYSN 68


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
           protein ZK1067.2 protein.
          Length = 2219

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 524 RNFHFFFFXIKITSPFLKNTCYSKSAGRNFLLWYLH 631
           RN    F   + TSPF  NT Y  + G ++L  Y H
Sbjct: 633 RNGSLHFAVHEETSPFKPNTTYQMAQGTSYLPCYKH 668


>AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein100 protein.
          Length = 361

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 211 YFHLITIQTSCFSVLASNTYIIVXKLHEKGSENTSTTISVLCL 83
           YFH+I +  S  SVL +  +I +  L +K    +ST + ++ L
Sbjct: 21  YFHIINVVLSFVSVLMNTFHIFI--LSQKSMRTSSTNVILISL 61


>AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein45 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 444 YLIFIYVVFSDQSLQRNHVIYFLTRNPEIFIFFF 545
           + I+ Y+V SD SL R H  +++T +  + + +F
Sbjct: 109 HFIYRYLVISDSSLTRRHFHWYMTGSFLLSVVYF 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,411,016
Number of Sequences: 27780
Number of extensions: 341382
Number of successful extensions: 619
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)