Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_J20
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   4.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   4.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   4.7  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   4.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   4.7  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 787 HARERXPKSNASREIKIKDRLY 722
           ++RER    + +RE K KDR Y
Sbjct: 220 YSRERSCSRDRNREYKEKDRRY 241


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 787 HARERXPKSNASREIKIKDRLY 722
           ++RER    + +RE K KDR Y
Sbjct: 231 YSRERSCSRDRNREYKEKDRRY 252


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 787 HARERXPKSNASREIKIKDRLY 722
           ++RER    + +RE K KDR Y
Sbjct: 231 YSRERSCSRDRNREYKEKDRRY 252


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 787 HARERXPKSNASREIKIKDRLY 722
           ++RER    + +RE K KDR Y
Sbjct: 231 YSRERSCSRDRNREYKKKDRRY 252


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 787 HARERXPKSNASREIKIKDRLY 722
           ++RER    + +RE K KDR Y
Sbjct: 231 YSRERSCSRDRNREYKEKDRRY 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,780
Number of Sequences: 438
Number of extensions: 5069
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)