Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_J19
         (872 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    23   3.1  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   4.1  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   7.2  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = +3

Query: 600 FSVSEVECLGACVNAPMIQVNDDYYEDLSVXDTKEI 707
           F + + +  G C +   +   +DYY+D+ +   K++
Sbjct: 200 FKIGDADGTGNCEDPEDVPGCEDYYKDVDLKALKKL 235


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 856 QIYALSAXCTPKPGPVGXSVSEVNPPR 776
           Q+  L    TPKP P   S  +  PPR
Sbjct: 243 QLKELENPPTPKPRPTKVSRRKPRPPR 269


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = +3

Query: 600 FSVSEVECLGACVNAPMIQVNDDYYEDLSVXDTKE 704
           F + + +  G C +   +   +DYY DL +   ++
Sbjct: 200 FKIGDADGTGNCEDPEDVPGCEDYYGDLDLKSIRK 234


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,932
Number of Sequences: 336
Number of extensions: 4700
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24099889
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)