Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_J19
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0024 + 25014274-25014375,25014655-25014720,25015117-250152... 185 5e-47
11_06_0617 - 25552308-25552978,25553384-25553454,25553691-255537... 29 3.7
05_05_0336 + 24167891-24167982,24168501-24168600,24169216-241693... 29 3.7
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603... 29 4.9
08_02_0633 + 19540584-19541383,19541557-19541610,19542123-19542444 29 4.9
12_02_0129 - 13981684-13982529 29 6.4
12_02_0112 + 13783758-13784717 29 6.4
05_03_0483 + 14585581-14587977 28 8.5
>05_06_0024 +
25014274-25014375,25014655-25014720,25015117-25015233,
25015757-25015834,25015911-25016016,25016150-25016196,
25016386-25016463,25016898-25016963,25017102-25017165,
25017406-25017428
Length = 248
Score = 185 bits (450), Expect = 5e-47
Identities = 90/204 (44%), Positives = 132/204 (64%), Gaps = 10/204 (4%)
Frame = +3
Query: 129 RTGVQGLWRISSRSIQTTASRQHDSLFVHRDTPEDNPSIPFEFSQANQKRVEALLAIYPE 308
R + L +++ S +A+ + S H D+PE+NP +P+EF++AN K+V +L+ YP
Sbjct: 7 RLAARRLLGLATSSASESAAARRLSRSPHLDSPENNPDMPWEFTEANMKKVNEILSHYPS 66
Query: 309 GHKRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 488
+K+ +IP+LDLAQ+Q GGW+P++AM+ +A+I+ + +RVYEVATFYTMF R +GKYH
Sbjct: 67 NYKQSGIIPMLDLAQQQHGGWVPVAAMNAIAKIVEVAPIRVYEVATFYTMFNRTKVGKYH 126
Query: 489 VQVCTTTPCWLRGSDAILNAIKQETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVND- 665
+ VC TTPC +RGS I A+ + + + G FSV E+EC+G CVNAPMI V D
Sbjct: 127 LLVCGTTPCMIRGSREIEEALLEHLGVKRNEVTSDGLFSVGEMECMGCCVNAPMIAVADY 186
Query: 666 ---------DYYEDLSVXDTKEII 710
+YYEDL+ EI+
Sbjct: 187 SKGSEGYTYNYYEDLTPKRVVEIV 210
>11_06_0617 -
25552308-25552978,25553384-25553454,25553691-25553727,
25553807-25553927,25554309-25554428,25554834-25555130,
25555286-25555288
Length = 439
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 357 VVVPDPVKESWHLACDLQGKWPTKPLLSFD 268
VVV D V +S HLA + G W + P FD
Sbjct: 313 VVVADVVMDSVHLAIEFTGNWSSHPDDHFD 342
>05_05_0336 +
24167891-24167982,24168501-24168600,24169216-24169375,
24170119-24170566,24171020-24171095,24171204-24171250,
24171345-24171528
Length = 368
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 546 AIKQETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYE 677
A+K EV G+ P G F + + + P I +ND Y E
Sbjct: 229 AVKSSETSEVKGSLPEGFFDNKDADLRARGIQPPKIDINDAYKE 272
>11_01_0730 -
6037375-6037509,6037892-6038019,6038339-6038423,
6038525-6038614,6040015-6040113,6040207-6040335,
6041341-6041463,6041549-6041711,6042331-6042380,
6042593-6042706,6042993-6043199,6043275-6043412,
6044708-6044770,6044845-6044928,6045014-6045094,
6045212-6045363,6045479-6045614,6045991-6046107
Length = 697
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 486 HVQVCTTTPCWLRGSDAILNA-IKQETNCEVGGNSP 590
H+ C +TP W R SD LN KQ+ + E G +P
Sbjct: 289 HMITCPSTPEWKRSSDLDLNGEAKQDDDDENGDLAP 324
>08_02_0633 + 19540584-19541383,19541557-19541610,19542123-19542444
Length = 391
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 737 GLXVLL*FADNFFCIXYRQVLIVIIIDLYHWGVH 636
GL +LL A F CI Y+ LI+I++ L H G+H
Sbjct: 344 GLSLLLANAFLFECIQYQLHLILILLVLDHSGLH 377
>12_02_0129 - 13981684-13982529
Length = 281
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 153 RISSRSIQTTASRQHDSLFVHRDTPEDN 236
R++ R + + A R HD+ +HRD DN
Sbjct: 81 RVAMRQLLSGAKRMHDAGLMHRDLKPDN 108
>12_02_0112 + 13783758-13784717
Length = 319
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 153 RISSRSIQTTASRQHDSLFVHRDTPEDN 236
R++ R + + A R HD+ +HRD DN
Sbjct: 119 RVAMRQLLSGAKRMHDAGLMHRDLKPDN 146
>05_03_0483 + 14585581-14587977
Length = 798
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 104 CI-LICYKSYIAKHCSRTDSFCSQLQLKLHIS 12
C+ +IC + +AKH +TD C Q +L+ S
Sbjct: 415 CVCIICRRKKVAKHSGKTDKKCLTYQTELYKS 446
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,984,066
Number of Sequences: 37544
Number of extensions: 504240
Number of successful extensions: 1128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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