Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_J19
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77663-9|CAB01203.1|  239|Caenorhabditis elegans Hypothetical pr...   271   4e-73
Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical pr...    29   4.3  

>Z77663-9|CAB01203.1|  239|Caenorhabditis elegans Hypothetical
           protein F53F4.10 protein.
          Length = 239

 Score =  271 bits (665), Expect = 4e-73
 Identities = 125/214 (58%), Positives = 158/214 (73%)
 Frame = +3

Query: 204 LFVHRDTPEDNPSIPFEFSQANQKRVEALLAIYPEGHKRGAMIPLLDLAQRQSGGWLPIS 383
           L VHRDT E+N ++ F+F+  NQ+R++A++ IYPEGHK GA+IPLLDLAQRQ G WLPIS
Sbjct: 27  LMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEGHKAGALIPLLDLAQRQHG-WLPIS 85

Query: 384 AMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQET 563
           AMH+VA+IL +P+MR YEVATFYTMF R+P+GKY +QVC TTPC LRG++ I   I+++ 
Sbjct: 86  AMHEVAKILEVPRMRAYEVATFYTMFNRQPVGKYFLQVCATTPCMLRGAETITETIEKKL 145

Query: 564 NCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVXDTKEIISXXXXXXXXXX 743
               G  +  G F+++EVECLGACVNAPMIQ+NDDY+EDL+  D  EI+           
Sbjct: 146 GIHAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKDVNEILDDLKAGRKPAA 205

Query: 744 XXXSGRFASXPLGGLTSLTEXPTGPGFGVQXALK 845
              SGR A+ P G LTSL E P GPGFG+Q ALK
Sbjct: 206 GPRSGRLAAEPFGELTSLKETPPGPGFGLQAALK 239


>Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical
           protein T06D8.5 protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 303 PEGHKRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTM 458
           P+  +R A+   L LAQ   G W+  S +       ++P++  Y +AT  TM
Sbjct: 162 PDMKRRMALATTLLLAQGGIGWWMVKSGLDPSKNSSDVPRVSQYRLATHLTM 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,309,755
Number of Sequences: 27780
Number of extensions: 431941
Number of successful extensions: 989
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)