Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_J19
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   3.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   4.9  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   6.4  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   6.4  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   6.4  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   6.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   8.5  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = +3

Query: 504 TTPCWLRGSDAILNAIKQETNCEVGGNSPCGKFSVSEVECLGACVNA--PMIQVNDDYYE 677
           T P W  G  A L  I  +TN   GG+     +        GAC +A     +++ D  +
Sbjct: 82  TVPRWRNGIPATLTYISLDTN--RGGSPKLTPYPNWAQNKAGACGSAITTAYRIHADSCD 139

Query: 678 DLSVXDTKEI 707
            L V DT  I
Sbjct: 140 RLWVLDTGTI 149


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 377 R*PASTLSLCQIQ*RNHGTSLVTFRVNGQQSLYSLL 270
           R P S   L +++  N+G S    R  GQQ+ Y LL
Sbjct: 369 RAPNSETKLAEMR-DNYGISAGLNRTAGQQAAYQLL 403


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 47  TNLFANSVSQYNFYSKLEYNQKNVIQ 124
           ++L  N++   N Y KL+Y   N I+
Sbjct: 305 SSLLNNTIHNNNNYKKLQYYNINYIE 330


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 47  TNLFANSVSQYNFYSKLEYNQKNVIQ 124
           ++L  N++   N Y KL+Y   N I+
Sbjct: 316 SSLLNNTIHNNNNYKKLQYYNINYIE 341


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 47  TNLFANSVSQYNFYSKLEYNQKNVIQ 124
           ++L  N++   N Y KL+Y   N I+
Sbjct: 316 SSLLNNTIHNNNNYKKLQYYNINYIE 341


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 47  TNLFANSVSQYNFYSKLEYNQKNVIQ 124
           ++L  N++   N Y KL+Y   N I+
Sbjct: 305 SSLLNNTIHNNNNYKKLQYYNINYIE 330


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 643 AFTQAPKHSTSETENLPQGLLPPTSQFVSCLI 548
           AFTQA    T E ++LP G       F  C++
Sbjct: 186 AFTQASLAMTREEKHLPIGASVLFEIFPFCIV 217


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 38  VSKTNLFANSVSQYNFYSKLEYNQKN 115
           +S   +  N+  +YN+ +K  YN  N
Sbjct: 85  LSNKTIHNNNNYKYNYNNKYNYNNNN 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,177
Number of Sequences: 438
Number of extensions: 5151
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)