Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_J15
(870 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0370 + 2909216-2909797 43 4e-04
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733... 31 1.6
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557... 30 2.1
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257... 29 4.8
06_03_1181 - 28227746-28229115,28229130-28229307 29 6.4
01_05_0657 + 24034198-24036306 29 6.4
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734... 29 6.4
01_01_0756 - 5836872-5838614 29 6.4
06_01_0077 + 626126-626137,626222-627421 28 8.5
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605... 28 8.5
>05_01_0370 + 2909216-2909797
Length = 193
Score = 42.7 bits (96), Expect = 4e-04
Identities = 25/93 (26%), Positives = 40/93 (43%)
Frame = +3
Query: 288 MGYASYLIWEECDGFTEDAVLPLTLYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGAA 467
M A++++W E G L + QL+ +W P+ GL + ++ A
Sbjct: 98 MALAAWMVWAE-GGLHRRPGATLAPFVAQLVAALAWAPLALGLAAPAAGLACCAAMAAGA 156
Query: 468 VATTLSFGSVNKTAGLLLVPYLAWLGYASSLSY 566
A FG VN AG L P +AW + ++Y
Sbjct: 157 AACARGFGGVNPVAGDLAKPCVAWAVLLAVINY 189
>01_06_0061 -
26071984-26072343,26072792-26073139,26073228-26073371,
26073454-26073723,26075019-26075825
Length = 642
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
Frame = +3
Query: 480 LSFGSV-NKT---AGLLLVPYLAWLGYASSL 560
L+FGS+ N T G+LLV LAWLG ASSL
Sbjct: 551 LTFGSLANSTPYLGGILLVIVLAWLGAASSL 581
>11_01_0682 -
5575297-5575308,5575391-5575516,5575779-5575885,
5575911-5576013,5576122-5576187,5576378-5576461,
5577448-5577522,5577615-5577668,5577752-5577895,
5578632-5578685,5578877-5578981,5579076-5579173,
5579660-5579729,5580444-5580566,5580647-5580727,
5580996-5581476,5581684-5581816,5582550-5582598,
5582704-5582892,5583642-5583703,5583762-5585316
Length = 1256
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/80 (26%), Positives = 35/80 (43%)
Frame = -3
Query: 550 AYPSQAKYGTSNKPAVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSC 371
AYP +++ T N + V+ A E + SF+ +K+G ++ S
Sbjct: 695 AYPLWSRHETQNYETDRMLKSTSQVIDQAMAQLWEAKVKFVNVSFSVEKLGRSRSVAISD 754
Query: 370 TPYNVRGRTASSVKPSHSSQ 311
+ + R TA S +PS SQ
Sbjct: 755 SGHRSRQSTADSNEPSGDSQ 774
>01_01_0320 -
2578911-2579144,2579243-2579455,2579580-2579858,
2579961-2580050,2580258-2580439,2581366-2582470
Length = 700
Score = 29.1 bits (62), Expect = 4.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 204 SWYDELKKPSWTPPK 248
SW +E+KKPSW P K
Sbjct: 600 SWQEEIKKPSWHPYK 614
>06_03_1181 - 28227746-28229115,28229130-28229307
Length = 515
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -3
Query: 544 PSQAKYG--TSNKPAVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQ 386
PSQA+ T N P +T+P ++ T P +I + + SF P I +Q Q
Sbjct: 103 PSQAQIPILTQNTPQAQITIPTQNLAQTLIPSQNQIPIQTHI-SFQP-HIPIQTQ 155
>01_05_0657 + 24034198-24036306
Length = 702
Score = 28.7 bits (61), Expect = 6.4
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 426 KLAFIEISVLSG-AAVATTLSFGSVNKTAGLLLVPYLAWLGYASSL---SYYIWKNNPKP 593
+L IE+ VL G AA+ L GS + + V W+ YA+S+ SY + P
Sbjct: 3 RLVRIEVLVLLGVAALFVLLILGSYRRQSSRNAVRVSIWVAYAASIPMVSYTLGLMQSSP 62
Query: 594 VKGQ*RS*QWNILLY 638
K S W I+L+
Sbjct: 63 YKNSLFS-VWAIILF 76
>01_02_0118 +
11271020-11271293,11272849-11273145,11273226-11273439,
11273563-11273672,11273746-11273945,11274439-11274501,
11274560-11274663,11274868-11275055,11275129-11275328,
11275463-11275693
Length = 626
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 84 LKDFVMANWPALGSIILPNVGGWANGLXFAGQIRKDSSEKSWYDELKKPSWT-PPKWV 254
++ FV W + G I NGL A Q K S S + +L+ SW+ PP V
Sbjct: 109 VRSFVNPVWTSSGRPITQGDSLNGNGLNTASQTEKQSDSDSSHKKLQGLSWSFPPSIV 166
>01_01_0756 - 5836872-5838614
Length = 580
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/75 (22%), Positives = 29/75 (38%)
Frame = +3
Query: 105 NWPALGSIILPNVGGWANGLXFAGQIRKDSSEKSWYDELKKPSWTPPKWVFGPAWTVLYS 284
N+P+ + P +G +G +++KSWY + W PK V V Y
Sbjct: 322 NFPSYDVELTPFLGKLLDGKEHELGFAVTNAQKSWYVDANLHLWLDPKSVATSGGLVAYD 381
Query: 285 SMGYASYLIWEECDG 329
+ ++ DG
Sbjct: 382 APKLTGKIVSNSSDG 396
>06_01_0077 + 626126-626137,626222-627421
Length = 403
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 23 QRLV*LNFIITSLQFLPIIRFKRFRNGKLACTWFNYPSKCWWMGQWIVFC 172
Q + + + + +LQ PI+R + K+ W++ ++C +M W V C
Sbjct: 230 QLIAVIEYSLYTLQLAPILRLE-----KIKTLWWDNMNECPYMRPWFVVC 274
>02_02_0007 +
6056281-6057024,6057273-6057539,6057622-6057765,
6057844-6058191,6058713-6059102
Length = 630
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Frame = +3
Query: 480 LSFGSV-NKT---AGLLLVPYLAWLGYASSL 560
LSFGS+ N T G+LLV LAWLG SL
Sbjct: 529 LSFGSLANSTPYLGGILLVIVLAWLGAVRSL 559
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,723,695
Number of Sequences: 37544
Number of extensions: 524605
Number of successful extensions: 1252
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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