Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_J15
(870 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81048-2|CAB02840.1| 553|Caenorhabditis elegans Hypothetical pr... 82 6e-16
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p... 33 0.27
Z50858-5|CAA90722.1| 534|Caenorhabditis elegans Hypothetical pr... 31 0.81
U13074-1|AAA96982.1| 534|Caenorhabditis elegans steroid hormone... 31 0.81
AF273840-1|AAG15187.1| 553|Caenorhabditis elegans sex-1 protein. 31 0.81
AF049869-1|AAC77795.1| 556|Caenorhabditis elegans SEX-1 protein. 31 0.81
U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein p... 30 2.5
AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical... 30 2.5
AF101309-5|ABD94097.1| 543|Caenorhabditis elegans Hypothetical ... 29 3.3
AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical ... 29 3.3
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 29 3.3
U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory ... 29 4.3
U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical pr... 29 4.3
L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degeneri... 29 4.3
AF036700-4|AAV34787.1| 437|Caenorhabditis elegans Hypothetical ... 29 5.7
AF036700-3|AAB88366.2| 479|Caenorhabditis elegans Hypothetical ... 29 5.7
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 28 10.0
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 28 10.0
Z11126-4|CAA77472.2| 180|Caenorhabditis elegans Hypothetical pr... 28 10.0
>Z81048-2|CAB02840.1| 553|Caenorhabditis elegans Hypothetical
protein C41G7.3 protein.
Length = 553
Score = 81.8 bits (193), Expect = 6e-16
Identities = 49/140 (35%), Positives = 73/140 (52%), Gaps = 2/140 (1%)
Frame = +3
Query: 186 KDSSEKSWYDELKKPSWTPPKW-VFGPAWTVLYSSMGYASYLIWEECDGFT-EDAVLPLT 359
KD W+ LKKP+W P V+ + S +GYASYL+++ GF D L L
Sbjct: 414 KDQQVADWWAALKKPNWAPKDVRVYSAVDLLTLSPLGYASYLVYKNGGGFDYNDTKLALG 473
Query: 360 LYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGAAVATTLSFGSVNKTAGLLLVPYLAW 539
LYG + L + PI K+ + +V+S A A + +F ++K AGLL+VP+ W
Sbjct: 474 LYGASVTLAVATIPIV-KKKELGCLWKNTTVVSLTAAAASFAFYKIDKKAGLLVVPFAVW 532
Query: 540 LGYASSLSYYIWKNNPKPVK 599
+ + L+Y I K N P+K
Sbjct: 533 TAFYAYLAYSIKKEN-DPIK 551
>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical protein
C47E8.8 protein.
Length = 1675
Score = 33.1 bits (72), Expect = 0.27
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = -3
Query: 493 LPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVKPSHSS 314
LP D V + D E++ S KS P++IG D SSS +VR R PS +
Sbjct: 878 LPEDPVSVQSRSDVCEVTAETSQKSVGPERIG-GDAQSSSENTVSVRNRVDLHGIPSKTP 936
Query: 313 Q 311
Q
Sbjct: 937 Q 937
>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 33.1 bits (72), Expect = 0.27
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = -3
Query: 493 LPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVKPSHSS 314
LP D V + D E++ S KS P++IG D SSS +VR R PS +
Sbjct: 878 LPEDPVSVQSRSDVCEVTAETSQKSVGPERIG-GDAQSSSENTVSVRNRVDLHGIPSKTP 936
Query: 313 Q 311
Q
Sbjct: 937 Q 937
>Z50858-5|CAA90722.1| 534|Caenorhabditis elegans Hypothetical
protein F44A6.2 protein.
Length = 534
Score = 31.5 bits (68), Expect = 0.81
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +3
Query: 621 WNILLYALNIDIRKGINFEQIIIRFH*ISTVDRNVIIINNA 743
W I + +++DI++ +NF + I +F+ I+ D+ V++ NA
Sbjct: 299 WQIYAHEIDVDIKEVVNFVKEIPKFNFINGNDKAVLLRKNA 339
>U13074-1|AAA96982.1| 534|Caenorhabditis elegans steroid hormone
receptor familymember CNR14 protein.
Length = 534
Score = 31.5 bits (68), Expect = 0.81
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +3
Query: 621 WNILLYALNIDIRKGINFEQIIIRFH*ISTVDRNVIIINNA 743
W I + +++DI++ +NF + I +F+ I+ D+ V++ NA
Sbjct: 299 WQIYAHEIDVDIKEVVNFVKEIPKFNFINGNDKAVLLRKNA 339
>AF273840-1|AAG15187.1| 553|Caenorhabditis elegans sex-1 protein.
Length = 553
Score = 31.5 bits (68), Expect = 0.81
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +3
Query: 621 WNILLYALNIDIRKGINFEQIIIRFH*ISTVDRNVIIINNA 743
W I + +++DI++ +NF + I +F+ I+ D+ V++ NA
Sbjct: 296 WQIYAHEIDVDIKEVVNFVKEIPKFNFINGNDKAVLLRKNA 336
>AF049869-1|AAC77795.1| 556|Caenorhabditis elegans SEX-1 protein.
Length = 556
Score = 31.5 bits (68), Expect = 0.81
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +3
Query: 621 WNILLYALNIDIRKGINFEQIIIRFH*ISTVDRNVIIINNA 743
W I + +++DI++ +NF + I +F+ I+ D+ V++ NA
Sbjct: 299 WQIYAHEIDVDIKEVVNFVKEIPKFNFINGNDKAVLLRKNA 339
>U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein
protein.
Length = 310
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +3
Query: 372 QLLLNWSWTPIFFGLKDFKL---AFIEISVLSGAAVATTLSFGSVNKTAGLLLVPYLAWL 542
Q N+S+ F + ++ A I+ ++L + T + FG + T+GL+ P + WL
Sbjct: 107 QFNFNFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAV-FGELLTTSGLITDPRITWL 165
Query: 543 GYASSLSY-YIWKN 581
++S + Y+ K+
Sbjct: 166 TFSSGYDFGYLLKS 179
>AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical
protein Y56A3A.20 protein.
Length = 310
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +3
Query: 372 QLLLNWSWTPIFFGLKDFKL---AFIEISVLSGAAVATTLSFGSVNKTAGLLLVPYLAWL 542
Q N+S+ F + ++ A I+ ++L + T + FG + T+GL+ P + WL
Sbjct: 107 QFNFNFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAV-FGELLTTSGLITDPRITWL 165
Query: 543 GYASSLSY-YIWKN 581
++S + Y+ K+
Sbjct: 166 TFSSGYDFGYLLKS 179
>AF101309-5|ABD94097.1| 543|Caenorhabditis elegans Hypothetical
protein H24G06.1e protein.
Length = 543
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = -3
Query: 508 AVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVK 329
A L +P S + PD + + +S +P K + ++S TP + T SS+
Sbjct: 57 ATNLEVPPTSTNLSRRPDDLNFASSLRSRSQSPNKFALSQMINSRDTPSSPSSTTGSSIV 116
Query: 328 PSHSSQMR 305
+ Q R
Sbjct: 117 GRNLQQRR 124
>AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical
protein H24G06.1d protein.
Length = 669
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = -3
Query: 508 AVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVK 329
A L +P S + PD + + +S +P K + ++S TP + T SS+
Sbjct: 183 ATNLEVPPTSTNLSRRPDDLNFASSLRSRSQSPNKFALSQMINSRDTPSSPSSTTGSSIV 242
Query: 328 PSHSSQMR 305
+ Q R
Sbjct: 243 GRNLQQRR 250
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = -3
Query: 508 AVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVK 329
A L +P S + PD + + +S +P K + ++S TP + T SS+
Sbjct: 1115 ATNLEVPPTSTNLSRRPDDLNFASSLRSRSQSPNKFALSQMINSRDTPSSPSSTTGSSIV 1174
Query: 328 PSHSSQMR 305
+ Q R
Sbjct: 1175 GRNLQQRR 1182
>U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory
abnormality protein10 protein.
Length = 724
Score = 29.1 bits (62), Expect = 4.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 192 CLCGFDRQXTIHWPIHQ 142
C+C FDRQ WP H+
Sbjct: 271 CICAFDRQTNDAWPCHR 287
>U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical
protein D1014.7 protein.
Length = 492
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 406 SSD*RTSSWHSLRSQCCPGQQWQRHCHSAVSIRQPVCYSYHT 531
SS+ W+ +R+ P RH A+ I++P Y YHT
Sbjct: 70 SSNCPYKEWNQIRTDSIPNAN--RHADWAIQIKKPSKYLYHT 109
>L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degenerin
protein.
Length = 724
Score = 29.1 bits (62), Expect = 4.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 192 CLCGFDRQXTIHWPIHQ 142
C+C FDRQ WP H+
Sbjct: 271 CICAFDRQTNDAWPCHR 287
>AF036700-4|AAV34787.1| 437|Caenorhabditis elegans Hypothetical
protein M04G7.3b protein.
Length = 437
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 442 SMNASLKSFNPKKIGVQDQLSSSCTPYN 359
S+N+S+K P KIG+ LS+ TP N
Sbjct: 401 SLNSSMKKSLPPKIGLPHPLSAEKTPLN 428
>AF036700-3|AAB88366.2| 479|Caenorhabditis elegans Hypothetical
protein M04G7.3a protein.
Length = 479
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 442 SMNASLKSFNPKKIGVQDQLSSSCTPYN 359
S+N+S+K P KIG+ LS+ TP N
Sbjct: 443 SLNSSMKKSLPPKIGLPHPLSAEKTPLN 470
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 386 LVLDSYFLRIEGLQAGIH*DLSAVRGSSGNDTVIRQCQ 499
L+L +++ +E L H D V S GNDT+ CQ
Sbjct: 11 LLLSNFWPTVESLNYKCHNDQILVVQSFGNDTIRMHCQ 48
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 386 LVLDSYFLRIEGLQAGIH*DLSAVRGSSGNDTVIRQCQ 499
L+L +++ +E L H D V S GNDT+ CQ
Sbjct: 11 LLLSNFWPTVESLNYKCHNDQILVVQSFGNDTIRMHCQ 48
>Z11126-4|CAA77472.2| 180|Caenorhabditis elegans Hypothetical
protein ZK643.6 protein.
Length = 180
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -1
Query: 870 TIHVPYQLTTXNHQSVNI--H-LXKYFYLFYQCNVKNAN 763
T H P QL+T H VN+ H L K +CN KNAN
Sbjct: 9 TTHSPIQLSTAQHLLVNVTQHCLEKCPATCGKCNRKNAN 47
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,370,260
Number of Sequences: 27780
Number of extensions: 453946
Number of successful extensions: 1108
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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