Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_J13
(433 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1250 - 25183375-25183815 132 9e-32
03_04_0027 + 16593133-16593573 130 6e-31
02_01_0563 + 4134954-4135388 128 3e-30
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 31 0.30
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 30 0.70
05_01_0141 - 937428-937717,938483-938705 30 0.92
06_03_1037 - 27058002-27058082,27058856-27059041,27060033-270601... 28 2.8
03_06_0471 + 34169562-34169892,34170121-34170347 28 2.8
11_05_0087 + 18970741-18972702 27 4.9
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021... 27 4.9
02_05_0608 + 30329174-30329362,30329681-30329907,30330035-303301... 27 4.9
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486 27 4.9
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626... 27 6.5
09_04_0564 + 18565583-18566449,18569662-18570123 27 8.6
07_03_0080 + 13193001-13193312 27 8.6
06_03_0306 - 19396423-19397112,19397645-19397916,19398047-19398215 27 8.6
01_06_0884 + 32715963-32716284,32716837-32717567 27 8.6
01_05_0764 + 25005657-25006186,25007107-25007250,25007414-25007879 27 8.6
>07_03_1250 - 25183375-25183815
Length = 146
Score = 132 bits (320), Expect = 9e-32
Identities = 60/131 (45%), Positives = 80/131 (61%)
Frame = +2
Query: 5 GHGRIGKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFXKNKNFCPVLNLDK 184
GHGRIGKHRKHPGGRGNAGG HHHRI DKYHPGYFGK+GMR FH +NK + P +N+++
Sbjct: 18 GHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHRLRNKFYSPAVNVER 77
Query: 185 LWTLVSEQTRLKYASAPHGKVPVINIVKAXXXXXXXXXXXPKQPVXXXXXXXXXXXXXXX 364
LW++V + + A A GK P++++ + P++P+
Sbjct: 78 LWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEKPIVVKAKLISKVAEKKI 135
Query: 365 TDVGGACVLSA 397
GGA VL+A
Sbjct: 136 KAAGGAVVLTA 146
>03_04_0027 + 16593133-16593573
Length = 146
Score = 130 bits (313), Expect = 6e-31
Identities = 62/132 (46%), Positives = 78/132 (59%), Gaps = 1/132 (0%)
Frame = +2
Query: 5 GHGRIGKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFXKNKNFCPVLNLDK 184
GHGRIGKHRKHPGGRGNAGG HHHRI DKYHPGYFGK+GMR FH N+ CP +N+++
Sbjct: 18 GHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLSNRFHCPAVNVER 77
Query: 185 LWTLVSEQTRLKYASAPHGKVPVINIVK-AXXXXXXXXXXXPKQPVXXXXXXXXXXXXXX 361
LW++V K A A GK PVI++ + P++P+
Sbjct: 78 LWSMVPTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQRPIVVKAKLISKVAEKK 134
Query: 362 XTDVGGACVLSA 397
GGA +L+A
Sbjct: 135 IKAAGGAVLLTA 146
>02_01_0563 + 4134954-4135388
Length = 144
Score = 128 bits (308), Expect = 3e-30
Identities = 61/132 (46%), Positives = 78/132 (59%), Gaps = 1/132 (0%)
Frame = +2
Query: 5 GHGRIGKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFXKNKNFCPVLNLDK 184
GHGRIGKHRKHPGGRGNAGG HHHRI DKYHPGYFGK+GMR FH N+ CP +N+++
Sbjct: 18 GHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHRLSNRFHCPAVNVER 77
Query: 185 LWTLVSEQTRLKYASAPHGKVPVINIVK-AXXXXXXXXXXXPKQPVXXXXXXXXXXXXXX 361
LW++V + A A GK PVI++ + P++P+
Sbjct: 78 LWSMVPAE-----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPERPIVVKAKLISKVAEKK 132
Query: 362 XTDVGGACVLSA 397
GGA +L+A
Sbjct: 133 IKAAGGAVLLTA 144
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 31.5 bits (68), Expect = 0.30
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = +2
Query: 5 GHGRIGKHRKHPGGRGNAGGEHHHRINMDKYH 100
G GR GK R GGRG G H+H N YH
Sbjct: 386 GRGR-GKGRGR-GGRGRGRGYHYHNNNQQSYH 415
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 30.3 bits (65), Expect = 0.70
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 38 PGGRGNAGGEHHHRINMDKYH 100
P +G GG HHH+ NM K H
Sbjct: 306 PVEKGTMGGGHHHKQNMQKQH 326
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 29.9 bits (64), Expect = 0.92
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +2
Query: 5 GH--GRIGKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFH 139
GH G G H H GG G GG H H + H G+ G G H
Sbjct: 125 GHHGGLFGGHHGHHGG-GLFGGHHGHHGGLFGGHHGFGGHHGHHGHH 170
>06_03_1037 -
27058002-27058082,27058856-27059041,27060033-27060176,
27060284-27061183
Length = 436
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 5 GHGRIGKHRKHPGGRGNAGGEHHHRINMDKYHPGYFG 115
G GR + R+ GRG GG +M++ H Y G
Sbjct: 215 GRGRGARGRERGRGRGRDGGRGRRSADMEEKHGIYLG 251
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 17 IGKHRKHPGGRGNAG--GEHHHRINMDKYHPGYFGK 118
+G H PGG G G G H + K+ G +GK
Sbjct: 141 VGAHMVRPGGGGGHGMFGHHGGKFKKGKFKHGKYGK 176
>11_05_0087 + 18970741-18972702
Length = 653
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Frame = +2
Query: 8 HGRIGKHRKHPGGRGN---AGGEHHHR 79
HGR G HR+H G AG HHR
Sbjct: 64 HGRHGHHREHRRGADELEPAGSPRHHR 90
>09_04_0302 +
16501020-16501049,16501568-16501659,16502063-16502198,
16502297-16502727,16502950-16503028
Length = 255
Score = 27.5 bits (58), Expect = 4.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 80 FCDGAHHQHYHDLLDAYG 27
+C+G HH H H D+ G
Sbjct: 132 YCNGGHHHHGHQCYDSVG 149
>02_05_0608 +
30329174-30329362,30329681-30329907,30330035-30330190,
30330893-30331078,30331184-30331368,30331571-30331602
Length = 324
Score = 27.5 bits (58), Expect = 4.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 97 PSWILWQTXYEKFPLXKEQE 156
P WILW T YE P+ +++
Sbjct: 245 PFWILWSTSYEVVPMLDKKK 264
>02_02_0525 -
11182043-11182080,11182386-11182511,11182760-11183486
Length = 296
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 63 PPALPRPPGCLRCFPIRPCP 4
PPA P PP L C P+ P P
Sbjct: 10 PPAPPSPPPALPCDPMPPPP 29
>04_03_1020 -
21761297-21761555,21761630-21761739,21762402-21762635,
21762710-21762817,21762910-21762969,21763549-21763624,
21763710-21763870,21764485-21764547,21764657-21764744,
21765062-21765592,21766344-21766783
Length = 709
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -2
Query: 66 SPP-ALPRPPGCLRCFPIRPCP 4
SPP LP PPG C P+ P P
Sbjct: 263 SPPHPLPLPPGPATCSPLPPSP 284
>09_04_0564 + 18565583-18566449,18569662-18570123
Length = 442
Score = 26.6 bits (56), Expect = 8.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 38 PGGRGNAGGEHHHRI 82
PGG G GG+ HH++
Sbjct: 119 PGGGGGGGGDRHHQL 133
>07_03_0080 + 13193001-13193312
Length = 103
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 5 GHGRIGKHRKHPGGRGNAGGEHH 73
GH I + + GG+ GG+HH
Sbjct: 34 GHMNIHRKDRSAGGKSQGGGQHH 56
>06_03_0306 - 19396423-19397112,19397645-19397916,19398047-19398215
Length = 376
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 8 HGRIGKHRKHPGGRGNAGGEHHHRINMDKYH 100
HG H KH G AGG HHH + +H
Sbjct: 193 HGGAADH-KHDG----AGGHHHHHLMQPHHH 218
>01_06_0884 + 32715963-32716284,32716837-32717567
Length = 350
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 72 WCSPPALPRPPGCLRCFP 19
WC PA+P+ RCFP
Sbjct: 186 WCPVPAMPQVDWEFRCFP 203
>01_05_0764 + 25005657-25006186,25007107-25007250,25007414-25007879
Length = 379
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 41 GGRGNAGGEHHHRINMDKYH 100
GG G GG HHH + M H
Sbjct: 272 GGVGIVGGHHHHHLFMPGVH 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,257,323
Number of Sequences: 37544
Number of extensions: 227252
Number of successful extensions: 882
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -