Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_J12
         (828 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.2  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    22   5.2  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    21   9.0  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    21   9.0  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 87  NKISEKKPIILSCDSIFPRNVFKLIPQQ 170
           +K+ + K ++   D + PR V  +IP+Q
Sbjct: 163 HKLKKMKYLVEVQDEVKPRGVLNIIPKQ 190



 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 686 YYKTQVYSSENMKKMV*SHWNSLNSLCLQ 772
           YY+  + S +   K+V S +NS+ ++ L+
Sbjct: 4   YYRLSLKSRQKAPKIVNSKYNSILNIALK 32


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 686 YYKTQVYSSENMKKMV*SHWNSLNSLCLQ 772
           YY+  + S +   K+V S +NS+ ++ L+
Sbjct: 4   YYRLSLKSRQKAPKIVNSKYNSILNIALK 32


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +3

Query: 342 FHITSRGQ*LWYKRCL 389
           FH+ S     WY++C+
Sbjct: 190 FHVESHPNITWYQQCV 205


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +3

Query: 342 FHITSRGQ*LWYKRCL 389
           FH+ S     WY++C+
Sbjct: 190 FHVESHPNITWYQQCV 205


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,613
Number of Sequences: 336
Number of extensions: 4608
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)