Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_J12
(828 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein p... 155 5e-38
AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical... 155 5e-38
Z74474-1|CAA98954.2| 566|Caenorhabditis elegans Hypothetical pr... 33 0.19
AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical ... 30 2.3
U42439-3|AAA83507.1| 310|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z47811-1|CAA87785.3| 201|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 7.1
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n... 28 7.1
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 28 7.1
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 28 9.4
>U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein
protein.
Length = 310
Score = 155 bits (375), Expect = 5e-38
Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 4/170 (2%)
Frame = +1
Query: 322 MPSASFGSISLPGGS----DCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVAR 489
M S+S G GG+ + I +V+ N+ EEF IR V+ Y +VAMDTEFPGVVA
Sbjct: 1 MASSSSGGAGGAGGASGAPEVKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVAT 60
Query: 490 PIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYA 669
P+G FRS D+ YQ + CNV++L++IQ+G +++ G+ PP WQFNF F+ EDM++
Sbjct: 61 PLGTFRSKEDFNYQQVFCNVNMLKLIQVGFAMVNDKGELPPTGDVWQFNFNFSFAEDMFS 120
Query: 670 QDSIDLLQNSGLQFRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLXFHSG 819
+S+++L+ +G+ F + +GI F ELL +SGL+ I WL F SG
Sbjct: 121 HESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSG 170
>AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical
protein Y56A3A.20 protein.
Length = 310
Score = 155 bits (375), Expect = 5e-38
Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 4/170 (2%)
Frame = +1
Query: 322 MPSASFGSISLPGGS----DCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVAR 489
M S+S G GG+ + I +V+ N+ EEF IR V+ Y +VAMDTEFPGVVA
Sbjct: 1 MASSSSGGAGGAGGASGAPEVKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVAT 60
Query: 490 PIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYA 669
P+G FRS D+ YQ + CNV++L++IQ+G +++ G+ PP WQFNF F+ EDM++
Sbjct: 61 PLGTFRSKEDFNYQQVFCNVNMLKLIQVGFAMVNDKGELPPTGDVWQFNFNFSFAEDMFS 120
Query: 670 QDSIDLLQNSGLQFRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLXFHSG 819
+S+++L+ +G+ F + +GI F ELL +SGL+ I WL F SG
Sbjct: 121 HESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSG 170
>Z74474-1|CAA98954.2| 566|Caenorhabditis elegans Hypothetical
protein K10C8.1 protein.
Length = 566
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +1
Query: 448 WVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDE 594
+VA+D EF G+ I T + +YQ+LR NV R QLGLT +
Sbjct: 25 FVAIDFEFLGLDVSAIS-LHDTVESRYQILRDNVIKYRPCQLGLTLFKQ 72
>AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical
protein W09G12.7 protein.
Length = 368
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 370 CGIKDVWNHNLHEEFQIIRQVVQKYH 447
CG ++ H HEEF +VV KYH
Sbjct: 330 CGAQNEHEHTHHEEFSKTDKVVNKYH 355
>U42439-3|AAA83507.1| 310|Caenorhabditis elegans Hypothetical
protein F19C7.3 protein.
Length = 310
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 367 DCGIKDVWNHNLHEEFQIIRQVVQKYHWV 453
DC + +W H LH Q+I Q + YHW+
Sbjct: 202 DCKVIKLWRHQLHP--QLINQFI--YHWM 226
>Z47811-1|CAA87785.3| 201|Caenorhabditis elegans Hypothetical
protein K02C4.2 protein.
Length = 201
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +3
Query: 51 LSQCICVLNHSCNKISEKKPI---ILSCDSIFP 140
+ QC+C C K + K+P+ + C+ IFP
Sbjct: 19 IKQCLCKPYEKCLKAARKEPVEKCLAKCEKIFP 51
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 7.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 385 VWNHNLHEEFQIIRQVVQKYHWVAMD 462
+W N+HEE +++RQ ++ H + D
Sbjct: 2169 MWQSNVHEELKLLRQDIEARHAMLKD 2194
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 7.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 385 VWNHNLHEEFQIIRQVVQKYHWVAMD 462
+W N+HEE +++RQ ++ H + D
Sbjct: 2169 MWQSNVHEELKLLRQDIEARHAMLKD 2194
>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 62
protein.
Length = 1256
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 232 FVQNTQNKSKTTASKKTDNSSRLETDKRYKMPSASFGSISLPGGSDCG 375
F N QN+S + +NSS + K P S S L G G
Sbjct: 160 FQANLQNRSNRVMQQTPNNSSNHQNHLSLKQPHLSMNSTQLQSGFQTG 207
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 7.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 385 VWNHNLHEEFQIIRQVVQKYHWVAMD 462
+W N+HEE +++RQ ++ H + D
Sbjct: 2169 MWQSNVHEELKLLRQDIEARHAMLKD 2194
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 208 KRPSTGA*FVQNTQNKSKTTASKKTDNSSRLETDKRYKMPSAS 336
K P+ + V + KT A KKTD + +ET + K+P +S
Sbjct: 851 KNPTKDSGSVSSASGNGKTVAMKKTDQKT-IETLLKAKIPESS 892
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,600,074
Number of Sequences: 27780
Number of extensions: 435622
Number of successful extensions: 1114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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