Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_J12
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.65 
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   2.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   8.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 392 FQTSFIPQSLPPGSDMEPKLADGILYRLSVSKREELSVFFDAV 264
           FQ + +  SL   ++  PKLA  +LY++ ++  E   V   AV
Sbjct: 662 FQRTLMVGSLGKLTETNPKLARSVLYKIYLNTMESHEVRCTAV 704


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 435 PKVSLGSYGYRISRSSCTTNWRI 503
           P    GSYG      SC+ +W +
Sbjct: 33  PLFGWGSYGPEAGNVSCSVSWEV 55


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 713 LNCRPEFCNRSIESCAY 663
           L C P   NR I+ C+Y
Sbjct: 176 LGCFPRATNRDIKKCSY 192


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 61  HCDKNNK*NDLQNTRLQ 11
           HC  NN+ +++QNT  Q
Sbjct: 413 HCVNNNQNDNIQNTNNQ 429


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 353 SDMEPKLADGILYRLSVS 300
           +D + KLA GI  RLS+S
Sbjct: 217 NDRKEKLATGIYQRLSLS 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,080
Number of Sequences: 438
Number of extensions: 5305
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)