Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_J11
         (876 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    25   0.59 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    25   1.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.4  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   7.3  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 321 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIP 446
           + LWD    E   RL   +  +  VIL   ++   + LEN+P
Sbjct: 396 IKLWDMFQNESLTRLYKKAGKEIPVILWTSTLTQKEYLENLP 437


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 368 PQPIVIFLASGIPQSQFHLFSIHFDVGNVILK 273
           P P+V+ L   IP    H     F V N+IL+
Sbjct: 449 PIPLVVVLTHLIPFMLIHQGETQFVVANIILR 480


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 247 N*SLLNTISRHVLPHAPSPTIT---NFLRIAAIGPELAEEEHHH 125
           N S  ++ SRH + H P P +T   +  R+AA    +AE    H
Sbjct: 149 NYSAYSSASRHHVDHQPVPYLTPADDRGRVAAAAAMVAETASFH 192


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 80  IPEDSG*FLRNIGFIDTFFNRLSS 9
           IP D   FL N+  +D   NRL S
Sbjct: 311 IPNDLFRFLGNLRIVDFSHNRLRS 334


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,380
Number of Sequences: 336
Number of extensions: 4633
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)