Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_J01
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.6  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    28   2.1  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    27   2.7  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    27   2.7  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    27   2.7  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    27   2.7  
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    26   8.3  

>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 560 FMPCISLLNFYLNTVIPLIYIYMILVCTK 646
           F P +  +  +LNT++ + Y+Y I +C +
Sbjct: 25  FNPILLKIILFLNTIVCIFYVYKIALCNE 53


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +1

Query: 127 KVKKFISYWYXRYLLATELYMVETWERIVIHIVFGILFGLFWFFNYYITISAI 285
           +VK F+S W     +    +  E W  I I+I   IL  L   +   I + AI
Sbjct: 97  EVKDFLSIWINESFINENRFYSEIWGPIAIYICLFILLLLGLIYCSKIVVKAI 149


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 1   EWSFYYTFRTIYSSKVLYWSNXKISKQNET 90
           +W+ Y   +TIY++  L W   + SKQ ET
Sbjct: 649 DWTIYPKSKTIYANDGLQWQQFQ-SKQRET 677


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +1

Query: 127 KVKKFISYWYXRYLLATELYMVETWERIVIHIVFGILFGLFWFFNYYITISAI 285
           +VK F+S W     +    +  E W  I I+I   +L  L   +   I + AI
Sbjct: 97  EVKDFLSIWINESFINENRFYSEIWGPIAIYICLFVLLLLGLIYCSKIVVKAI 149


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -2

Query: 641 CRLKSYIYILKVLLYSNKNLEAKYKA*RI---FNIYIQFPLLHFVFIYIPPDPRF*YLNI 471
           C  K+  ++  +++ SN  L   YKA  +    ++   FPL +F+FI IP      Y + 
Sbjct: 24  CSRKNMFFLKNIIVLSNY-LYLLYKAWIVCTTISLCCDFPLFNFLFIAIPYFTEILYNDS 82

Query: 470 SLI 462
           SL+
Sbjct: 83  SLL 85


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +1

Query: 127 KVKKFISYWYXRYLLATELYMVETWERIVIHIVFGILFGLFWFFNYYITISAI 285
           +VK F+S W     +    +  E W  I I+I   +L  L   +   I + AI
Sbjct: 97  EVKDFLSIWINESFINENRFYSEIWGPIAIYICLFVLLLLGLIYCSKIVVKAI 149


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +1

Query: 127 KVKKFISYWYXRYLLATELYMVETWERIVIHIVFGI--LFGLFWFF 258
           +VK F+S W     +    +  E W  I I+I   I  L GL   F
Sbjct: 117 EVKDFLSIWINESFINENRFYSEIWGPIAIYICLFILLLLGLICMF 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,508,299
Number of Sequences: 5004
Number of extensions: 71561
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)