Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_J01
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0429 - 3132848-3135043                                           30   2.2  
01_03_0246 - 14207899-14208052,14208132-14208206,14208682-142088...    30   2.2  
05_04_0198 + 18973973-18974592,18974992-18975440,18976031-189761...    30   2.9  
04_04_1666 + 35202970-35203163,35203615-35203677,35204834-35205815     30   2.9  
09_06_0312 + 22235287-22235334,22235418-22235535,22235628-222356...    29   3.8  

>02_01_0429 - 3132848-3135043
          Length = 731

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 220 IVFGILFGLFWFFNYYITISAISRLRGNHGII 315
           ++FGI FGLF+ +   +    + RLR   GI+
Sbjct: 692 VIFGITFGLFFAYGVLLDQMVLKRLRSLQGIL 723


>01_03_0246 -
           14207899-14208052,14208132-14208206,14208682-14208801,
           14208905-14208981,14209204-14209285,14209439-14209485,
           14209561-14209681,14210188-14210235,14210478-14210569,
           14211001-14211057,14211203-14211273,14211376-14211493,
           14211574-14211621
          Length = 369

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +1

Query: 136 KFISYWYXRYLLATELYMVETWERIVIHIVFGILFGLFWFFNYYITISAISRLRGN 303
           +F   WY       E  M  TW+ I   + F ++FG   F  +  TI     LR N
Sbjct: 181 QFFCAWYIVDYFVHEELMTSTWDIIAERLGFMLVFGDLVFIPFTFTIQGWWLLRNN 236


>05_04_0198 +
           18973973-18974592,18974992-18975440,18976031-18976166,
           18976252-18976323,18976389-18976457,18976546-18976617,
           18978192-18978250,18978643-18978734
          Length = 522

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 565 ALYFASKFLFEYSNTFNIYIYDFSLHK 645
           ALYFA   + E S TFN+YI D+S ++
Sbjct: 276 ALYFADT-VSESSRTFNVYINDYSFYE 301


>04_04_1666 + 35202970-35203163,35203615-35203677,35204834-35205815
          Length = 412

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 257 STTTSRYQPYH-DCGGITGSFRHEWRYRHRNC 349
           +TTT+  QP   D   I  S RH  RY HR+C
Sbjct: 379 ATTTACEQPSDSDRANIASSLRHSHRYFHRSC 410


>09_06_0312 +
           22235287-22235334,22235418-22235535,22235628-22235698,
           22235799-22235855,22236271-22236362,22236604-22236651,
           22237397-22237517,22237596-22237642,22237796-22237877,
           22238526-22238611,22238864-22238938,22239018-22239171
          Length = 332

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 136 KFISYWYXRYLLATELYMVETWERIVIHIVFGILFGLFWFFNYYITISA 282
           +F   WY       E +M  TW+ I   + F ++FG   F  +  TI +
Sbjct: 181 QFFCAWYIVDYFVHEEFMTSTWDIIAERLGFMLVFGDLVFIPFTFTIQS 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,710,137
Number of Sequences: 37544
Number of extensions: 431259
Number of successful extensions: 877
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)