Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_J01
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.8  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   8.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 550 LNIL-YALYFASKFLFEYSNTFNIYIYDFSLH 642
           LNI+ Y + F ++   E +NTF   IY F+++
Sbjct: 509 LNIVHYGIGFITQSDIELANTFKAIIYGFNVN 540


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 891 AEFTTGSETRPTEKIRRETQ 832
           A  TTG+ T PT ++R+  Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 290 DCGGITGSFRHEWRYRHRNCY 352
           +C GI      E+ YR   CY
Sbjct: 114 ECKGIAKGDNCEYAYRFNKCY 134


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
 Frame = +3

Query: 669  PNR----VSYSIFGTTQDVSSRTIIGAFRYHKHWPP 764
            PNR    V  S + T   +   T+I + R H  W P
Sbjct: 1649 PNRKLPPVPGSNYNTCDRIKRGTVIRSIRSHSTWDP 1684


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,190
Number of Sequences: 438
Number of extensions: 5802
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)