Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_I24
         (766 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    24   1.2  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          24   1.2  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.7  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.2  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 447 TTNPRKSQSLAPRGPMQPPVYVSPRTCAFDTE 352
           + +P+  Q L  + P    V V   TC +DTE
Sbjct: 170 SASPKACQFLYNQFPGSSQVVVKDETCQYDTE 201


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 447 TTNPRKSQSLAPRGPMQPPVYVSPRTCAFDTE 352
           + +P+  Q L  + P    V V   TC +DTE
Sbjct: 190 SASPKACQFLYNQFPGSSQVVVKDETCQYDTE 221


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 496 IVRKEYPAGSNEGRKTNNESKEEPKS 419
           +  +E P G N G KTN   +E P++
Sbjct: 296 LAAQEIP-GQNPGEKTNIAPRERPRA 320


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 586 LKHERSSENEGILHEQTHSRP 524
           LKH    + +G+LH Q +  P
Sbjct: 622 LKHALDLDRQGLLHRQFNLPP 642


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,417
Number of Sequences: 336
Number of extensions: 4430
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)