Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_I24
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce... 41 2e-04
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 29 0.96
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 27 2.2
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 27 3.9
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 26 5.1
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 26 5.1
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 26 5.1
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe... 26 6.8
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 26 6.8
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 9.0
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 25 9.0
>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 170
Score = 40.7 bits (91), Expect = 2e-04
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Frame = +2
Query: 212 LASILAGLLFFAGWWFIIDAASVYPGDLPNAAHVCGV------MATLSMIMVNSVSNAQV 373
L AG++F + W +DAA D H+ + + L +++VNS+ +++
Sbjct: 23 LGVYFAGIMFASAVWVFVDAALYSAFDYARNLHITFIDWIPFLCSILGIVIVNSIDKSRL 82
Query: 374 RGET--YTGGCMGPRGARLWLFLGFVVGFASLIAACWILFANYVNASSSKHAWPGVGLFM 547
G++ YT + R AR LF+GF + L + + YV A + G L M
Sbjct: 83 SGDSFAYTDESLA-RKARFILFIGFALLAGGLGGSFTVFILKYVVA-----GYEGKSLLM 136
Query: 548 QNAFIFAGSLVFKFGRTEDLW 610
+A I + +++F T LW
Sbjct: 137 GSANIIS-NILFMISATA-LW 155
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 28.7 bits (61), Expect = 0.96
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 154 ETTHGD*YYI*TKVLKVFIRSILKCSRCNFNPFCSF 47
++T D Y + ++K F+ ++LK RC + F F
Sbjct: 330 KSTSRDRYLVYNSLIKSFVNTVLKTFRCRYTQFLIF 365
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = -2
Query: 600 SVRPNLNTRDPAKMKAFCMNKPTPGQACLEELALT*FAKSIQQAAMRDAKPTTNPRKSQS 421
S PN + PA + N P+ A LA T + + ++NPR S
Sbjct: 375 STFPNPSVASPAFPNSSTSN-PSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSP 433
Query: 420 LAPRGPMQPPV 388
LA +PPV
Sbjct: 434 LASNAENKPPV 444
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 422 LWLFLGFVVGFASLIAACWILFANYV 499
LW G ++GFA I A ++ AN++
Sbjct: 675 LWRNCGIILGFAIFILASSLILANFI 700
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 440 FVVGFASLIAACWILFAN-YVNASSSKHAW 526
F++G+ S AA W+ F +++ S K W
Sbjct: 236 FIIGYVSTFAAYWLGFCGIFLDYSRRKRVW 265
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 332 LSMIMVNSVSNAQVRGETYTGGCMGPRGARL--WLFLGFVVGFASLIAACWILF 487
L+ + V S + G TG P+ + L W +L + G S I+A WILF
Sbjct: 170 LAYLYVCSCFSGAFGGLIATGLTKIPKSSGLPNWGWLYIIEGLISAISALWILF 223
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 496 IVRKEYPAGSNEGRKTNNESKEEPKSGTTRSHATTCV 386
+ + E PA + N SKE K +T H TT V
Sbjct: 278 LAKNESPADVSNNESGNESSKEPDKEHSTPIHPTTPV 314
>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 331 PVNDNGQFGVKCTGSWRNIHRWLHGTAWCQTLAL 432
P NDNG F V + S + ++ H ++ +T A+
Sbjct: 379 PSNDNGSFNVSSSSSSQTSNKKRHDHSYNETAAI 412
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -2
Query: 549 CMNKPTPGQACLEELALT*FAKSIQQAAM 463
CM P +AC+++L+ T F +++ A+
Sbjct: 225 CMAHPETLEACIKDLSATTFVATVESVAL 253
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 413 GARLWLFLGFVVGFASLIAACWILFANYVNASSSKHAW--PGVGL 541
G++L VV S + W++ + S+KH W P +GL
Sbjct: 1184 GSKLTKLWKIVVMTVSFLVGAWLIIFYVLRKLSNKHTWMVPVLGL 1228
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 9.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = -1
Query: 598 SASELKHERSSENEGILHEQTHSRPGVFGGTSIN-----IVRKEYPAGSNEGRKTNNES 437
S +++ +SE + +LH + HSR V GG +++ I R Y S+ N+ES
Sbjct: 656 SECSMEYNSTSEEDILLHSRFHSR--VLGGVTVSFQCSPIYRVNYGLSSDCIYSINSES 712
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,603
Number of Sequences: 5004
Number of extensions: 68170
Number of successful extensions: 186
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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