Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_I24
(766 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_42381| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_8975| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_16319| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_20539| Best HMM Match : VWA (HMM E-Value=5.1848e-44) 29 5.4
SB_29953| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_40409| Best HMM Match : HSBP1 (HMM E-Value=5.3) 28 7.2
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_32481| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_45712| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -1
Query: 622 LSLRPKILSASELKHERSSENEGILHE-QTHSRPGVFGGTSINIVRKEYPAGSNEGRKTN 446
+ R K+ ++ E ++ G H + H++P GGT NI + P G + ++N
Sbjct: 555 VDFRNKLEGDTKRNQESQKKHRGGTHSSEAHNKPK--GGTQHNIESQNNPKGGSHRSESN 612
Query: 445 NESKEEPK 422
+++K PK
Sbjct: 613 SKTKRGPK 620
>SB_42381| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 32.3 bits (70), Expect = 0.44
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -2
Query: 486 KSIQQAAMRDAKPTTNPRKSQSLAPRGPMQPPVYVSPRTCAFD 358
K ++A + K T+PRKS+SL P + P +C+FD
Sbjct: 22 KREEEAKKSEQKAKTSPRKSKSLREPRPRRDETRNQPESCSFD 64
>SB_8975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1002
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 601 LSASELKHERSSENEGILHEQTHSRPGVF 515
+S +KHE E EG L E + SRPG+F
Sbjct: 76 ISHGAIKHELKEELEGELLETSLSRPGIF 104
>SB_16319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -2
Query: 294 RSPGYTE-AASIINHHPAKNSSPANIDAKMFRFSPLSNQTQLGMLMFSKQLM 142
R Y E +A II H P N + N+DA+ R S N+ + M K+L+
Sbjct: 56 RKERYCEFSALIIVHDPQLNQNALNLDAEQVRTSGEKNKFRCDMSASRKELL 107
>SB_20539| Best HMM Match : VWA (HMM E-Value=5.1848e-44)
Length = 262
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = -2
Query: 474 QAAMRDAKPTTNPRKSQSLAPRGPMQPPVYVSPRTCAFDTELTIIIDRVAITPHT*AALG 295
QA + + T+ PR Q+ P P PP+ PRT A T+ + R P T A
Sbjct: 193 QATIPPPRFTSRPRLPQTQRP--PTLPPLTFPPRTFAPLTQPPRPVTRRRDVPPTPAPTR 250
Query: 294 RSPGYT 277
R P +T
Sbjct: 251 RPPVFT 256
>SB_29953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 431 FLGFVVGFASLIAACWILFANYVNASSSKHAWPGVGLFMQNAFIFAGSLVFK 586
F GF + L+A WI N + + + H+ G N F F G L F+
Sbjct: 18 FSGFTHAYMGLVARFWIEKQNSKDIAKTSHSETGYADIGNNGFAFRG-LAFR 68
>SB_40409| Best HMM Match : HSBP1 (HMM E-Value=5.3)
Length = 319
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Frame = +2
Query: 215 ASILAGLLFFAGWWFIIDAASVYPGDLPNA--AHVCGVMATLSMIMVNSVSNAQVRG--E 382
A +L +L A WWF +D YP L A A C V + + + G E
Sbjct: 141 ALLLIIVLRDAFWWFFLDKFQYYPDCLAQALYASYCDVFPRSYNLFDDDFKTDLMNGVYE 200
Query: 383 TYTGGCMGPRGARLWLF 433
TG PR + W F
Sbjct: 201 WITGTRPPPRSWQKWHF 217
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 297 GRSPGYTEAASIINHHPAKNSSPANIDAKMFRFSPLSNQT 178
G SP T A S++N + +S+P++ K SPL N +
Sbjct: 2150 GDSPRSTTAPSVVNSSLSPSSTPSSTPLKGTSSSPLQNMS 2189
>SB_32481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +2
Query: 314 CGVMATLSMIMVNSVSNA-QVRGETYTG--GCMGPRGARLWLFLGFVVGFASLIAACWIL 484
CG +A L+ + + A Q G Y GP A L+ + G ++ ++ A ++
Sbjct: 84 CGFLALLACLCYTELGTAVQKSGAEYAYLMEAFGPIPAFLFAWTGIIINRPAITAIVSLI 143
Query: 485 FANYV 499
FA YV
Sbjct: 144 FAEYV 148
>SB_45712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -2
Query: 399 QPPVYVSPRTCAFDTELTIIID 334
+PP+ + PRTCA TEL ++ID
Sbjct: 19 RPPLLLFPRTCA--TELALLID 38
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,802,739
Number of Sequences: 59808
Number of extensions: 529590
Number of successful extensions: 1312
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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