Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_I20
(842 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 46 5e-05
01_07_0304 - 42628086-42628104,42628828-42630263 36 0.031
07_03_1045 + 23528768-23528879,23528979-23530399 35 0.071
01_05_0328 + 21035231-21036931 33 0.22
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133... 33 0.28
03_02_0023 + 5065962-5066079,5066179-5067614 33 0.28
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631... 32 0.66
03_02_0024 + 5079690-5081351 32 0.66
02_04_0370 - 22427559-22427590,22427783-22427964,22428754-224289... 32 0.66
07_03_1046 - 23531218-23532638,23532781-23532868 31 1.5
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 29 3.5
05_06_0098 + 25560158-25560925 29 3.5
03_01_0020 + 180963-181346,181432-181994,183000-183822 29 4.6
10_08_0878 - 21239104-21239968,21242008-21242927 28 8.1
10_01_0052 - 750902-751697,753077-753603,753696-753913,754012-75... 28 8.1
04_03_0649 - 18402976-18403220,18403305-18404499 28 8.1
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 45.6 bits (103), Expect = 5e-05
Identities = 30/119 (25%), Positives = 55/119 (46%)
Frame = +1
Query: 430 TTSQFTLLYSIYSWPNVILCFIGGYLVDRYFGVRLGTVIYMTIVFIGAVIFASGVYINTY 609
T S ++ S + W ++ IGG LVD Y G R+ + Y ++ A + +
Sbjct: 132 TPSFAGVVQSSFLWGYLVSPIIGGALVDYYGGKRV--MAYGVALWSLATFLSPWAAARSL 189
Query: 610 WLMILGRFVFGIGGESLQVVVNNYVVLWFKGKELNMVFGLQLSFSRFGSTVNFXIMEPI 786
WL + R + G+ +NN V+ WF E + G+ ++ + G+T+ ++ PI
Sbjct: 190 WLFLSTRVLLGMAEGVALPSMNNMVLRWFPRTERSSAVGIAMAGFQLGNTIGL-LLSPI 247
>01_07_0304 - 42628086-42628104,42628828-42630263
Length = 484
Score = 36.3 bits (80), Expect = 0.031
Identities = 23/74 (31%), Positives = 41/74 (55%)
Frame = +1
Query: 427 LTTSQFTLLYSIYSWPNVILCFIGGYLVDRYFGVRLGTVIYMTIVFIGAVIFASGVYINT 606
+T + +L I + +++ F G D + G RL ++ I F+GA++ G+ +N
Sbjct: 3 ITDVEVEILLGILNLYSLVGSFAAGRTSD-WIGRRLTIILAAVIFFVGAIMM--GLSVN- 58
Query: 607 YWLMILGRFVFGIG 648
Y +++ GRFV GIG
Sbjct: 59 YPMLMAGRFVAGIG 72
>07_03_1045 + 23528768-23528879,23528979-23530399
Length = 510
Score = 35.1 bits (77), Expect = 0.071
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +1
Query: 412 KDDTHLTTSQFTLLYSIYSWPNVILCFIGGYLVDRYFGVRLGTVIYMTIVFIGAVIFASG 591
K D +++ + +L I + ++I F G D + G R V I F GA F G
Sbjct: 50 KKDFNISDGKVEVLMGILNLYSLIGSFAAGRTSD-WIGRRYTIVFAAVIFFAGA--FLMG 106
Query: 592 VYINTYWLMILGRFVFGIG-GESLQV 666
+N Y +++ GRFV GIG G +L +
Sbjct: 107 FAVN-YAMLMFGRFVAGIGVGYALMI 131
>01_05_0328 + 21035231-21036931
Length = 566
Score = 33.5 bits (73), Expect = 0.22
Identities = 15/68 (22%), Positives = 31/68 (45%)
Frame = +1
Query: 397 LVDNFKDDTHLTTSQFTLLYSIYSWPNVILCFIGGYLVDRYFGVRLGTVIYMTIVFIGAV 576
LV HL ++ + + + + +LC +GG+L D + G L ++ + IG
Sbjct: 45 LVTYLTGTMHLPSAAAANVVTDFMGTSFLLCLLGGFLADSFLGRYLTIAVFALVQSIGTA 104
Query: 577 IFASGVYI 600
+ A+ +
Sbjct: 105 LLAASTLV 112
>05_05_0059 +
22011168-22011662,22012668-22012894,22013029-22013377,
22013464-22013508,22013589-22013735,22013851-22013988,
22014126-22014159,22014258-22014430
Length = 535
Score = 33.1 bits (72), Expect = 0.28
Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 1/125 (0%)
Frame = +1
Query: 430 TTSQFTLLYSIYSWPNVILCFIGGYLVDRYFGVRLGTVIYMTIVFIGAVIFASGVYINTY 609
++S ++ S + W V +GG L DRY G + V+ F + +
Sbjct: 157 SSSFLGIVQSSFLWGYVFSSMVGGALADRYGGKK---VMAGAAALWSLATFLTPWAASQS 213
Query: 610 WLMILG-RFVFGIGGESLQVVVNNYVVLWFKGKELNMVFGLQLSFSRFGSTVNFXIMEPI 786
+M+L R +FG+ ++ ++ WF E G+ + G+ ++F I
Sbjct: 214 TIMLLAIRALFGLAEGVAFPTMSTFLPKWFPTHERATAVGISMGGFHLGNVISFLATPII 273
Query: 787 YRWIG 801
IG
Sbjct: 274 MSHIG 278
>03_02_0023 + 5065962-5066079,5066179-5067614
Length = 517
Score = 33.1 bits (72), Expect = 0.28
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +1
Query: 412 KDDTHLTTSQFTLLYSIYSWPNVILCFIGGYLVDRYFGVRLGTVIYMTIVFIGAVIFASG 591
K+D +T +Q +L + + ++ G D + G R V+ I F GA++ G
Sbjct: 52 KEDLKITDTQIEILAGVINIYSLFGSLAAGMTSD-WLGRRYTMVLAAAIFFTGALLM--G 108
Query: 592 VYINTYWLMILGRFVFGIG-GESLQV 666
+ N Y ++ GRFV GIG G +L +
Sbjct: 109 LAPN-YAFLMAGRFVAGIGVGYALMI 133
>03_06_0500 -
34361139-34362006,34362295-34362818,34362908-34363125,
34363259-34363406
Length = 585
Score = 31.9 bits (69), Expect = 0.66
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +1
Query: 469 WPNV--ILCFIGGYLVDRYFGVRLGTVIYMTIVFIGAVI 579
W +V ++ +GG+L D Y G R TV++ T++++ +I
Sbjct: 88 WTSVTTLMPLVGGFLADGYLG-RFSTVLFSTLIYLSGLI 125
>03_02_0024 + 5079690-5081351
Length = 553
Score = 31.9 bits (69), Expect = 0.66
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +1
Query: 412 KDDTHLTTSQFTLLYSIYSWPNVILCFIGGYLVDRYFGVRLGTVIYMTIVFIGAVIFASG 591
K D +++ ++ +L I + +++ G D + G R V+ I F GA+I
Sbjct: 86 KKDLNISDAKVEVLAGIINIYSLVGSLAAGRTSD-WIGRRYTMVLASVIFFAGALIMGLA 144
Query: 592 VYINTYWLMILGRFVFGIG-GESLQV 666
+Y +++LGRFV G+G G +L +
Sbjct: 145 P---SYAIVMLGRFVAGVGVGYALMI 167
>02_04_0370 -
22427559-22427590,22427783-22427964,22428754-22428939,
22429125-22429280,22429366-22429589,22430933-22430968,
22431390-22431539
Length = 321
Score = 31.9 bits (69), Expect = 0.66
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 420 HTFDNFPVYFALFYIFMAQCYIM-LYWWILS*QIFWCKIRNSNIHD 554
H FD P+Y+ +F + ++ +YWW+L ++ +I+ N+ D
Sbjct: 263 HNFDG-PIYYYVFNSLLFSLLVLHIYWWVLIYRMLVRQIKTRNVGD 307
>07_03_1046 - 23531218-23532638,23532781-23532868
Length = 502
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +1
Query: 412 KDDTHLTTSQFTLLYSIYSWPNVILCFIGGYLVDRYFGVRLGTVIYMTIVFIGAVIFASG 591
K D +T Q +L I + +++ F G D + G R T+VF A FA
Sbjct: 42 KKDLKITDVQVEILMGILNIYSLVGSFAAGRTAD-WIGRRF------TVVFAAAFFFARA 94
Query: 592 V---YINTYWLMILGRFVFGIG 648
+ + Y +++GRFV G+G
Sbjct: 95 LLMGFSGDYATLMVGRFVAGVG 116
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 29.5 bits (63), Expect = 3.5
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = +1
Query: 448 LLYSIYSWPNVILCFIGGYLVDRYFG-VRLG-TVIYMTIVFIGAVIFASGVYINTYWLMI 621
L+ S + W ++ +GG DR+ G V LG V++ + I V+ I +L++
Sbjct: 222 LIQSSFFWGYLLTQILGGIWADRFGGKVVLGFGVVWWS---IATVLTPLAAKIGLPFLLV 278
Query: 622 LGRFVFGIGGESLQVVVNNYVVLWFKGKELNMVFGLQLSFSRFGS 756
+ F+ GIG +NN + W E + L S GS
Sbjct: 279 MRAFM-GIGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMYLGS 322
>05_06_0098 + 25560158-25560925
Length = 255
Score = 29.5 bits (63), Expect = 3.5
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Frame = -1
Query: 752 PNLENDNCSPNTMF---SSFPLNHRXXXXXXXTCNDS--PPIPNTNLPSIISQYVFI*TP 588
P+ + SP++ SS P +HR + + PP P T +P I F T
Sbjct: 8 PSSSTSSSSPSSAAAAASSSPSSHRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTF 67
Query: 587 LANMTAPIKTMVMYITVPNLTPKYLSTKYPPIKHN 483
+ TA K +V +T + TP ++ PP K N
Sbjct: 68 VQADTASFKQVVQMLTGSDTTP---PSQRPPAKSN 99
>03_01_0020 + 180963-181346,181432-181994,183000-183822
Length = 589
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = +1
Query: 397 LVDNFKDDTHLTTSQFTLLYSIYSWPNVILCFIGGYLVDRYFGVRLGTVIYMTIVFIGAV 576
LV HL ++ + + + +LC +GG+L D Y G L I+ + G
Sbjct: 72 LVTYLTGTMHLGSAASANAVTNFLGTSFMLCLLGGFLADTYLGRYLTIAIFTAVQAAGMA 131
Query: 577 I 579
+
Sbjct: 132 V 132
>10_08_0878 - 21239104-21239968,21242008-21242927
Length = 594
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 481 ILCFIGGYLVDRYFGVRLGTVIYMTIVFIGAVI 579
+LC +GG++ D Y G L I+ + G +I
Sbjct: 84 MLCLLGGFVADTYLGRYLTIAIFEAVQATGVMI 116
>10_01_0052 -
750902-751697,753077-753603,753696-753913,754012-754114,
754337-754393
Length = 566
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 457 SIYSWPNVILCFIGGYLVDRYFGVRLGTVIYMTIVFIGAVI 579
SI+ + IG +L D Y+G TVI + I+ IG +I
Sbjct: 90 SIWIGTSFFTPLIGAFLADTYWGRYWTTVISLFIIIIGMLI 130
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 259 SGSSRTPQISPTSWRHPANRIHRFIALLLMCFLCF 363
S SS T S SWR R+H LLL+ +C+
Sbjct: 443 SSSSTTSSFSRLSWRMLDVRLHLGALLLLLLLVCY 477
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,386,872
Number of Sequences: 37544
Number of extensions: 405206
Number of successful extensions: 905
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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