Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_I19
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.44
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 27 2.4
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2... 27 2.4
SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 5.5
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 26 5.5
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 26 7.2
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 9.6
SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po... 25 9.6
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 9.6
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 25 9.6
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 25 9.6
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 29.9 bits (64), Expect = 0.44
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = +3
Query: 318 FSNGEENMTISQVTNGISEIVQQYSGTE-VLNGSDVKIQFRAR-----KDDMLHLYSSFS 479
+ N E+ T+S + + S+ S ++ VL ++I+ R DD LHL
Sbjct: 241 YLNSSEDSTLSPLPSRSSDTNDPQSDSQHVLRQERMRIELRQYIKNILNDDELHLTEEVL 300
Query: 480 SFIGEIPLNLNINNAKYMSFGGDLKKITELK 572
SF+ + P+ L + ++F +L I +L+
Sbjct: 301 SFLTDDPVTLTASELTDINFRQELDVIRQLE 331
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +3
Query: 282 DYGNIICKVDVEFSNGEENMTISQVTNGISEIVQ-QYSGTEVLNGSDVKIQFRARKDDML 458
+YG I V+ F N+ +GI+ + +Y GT + NG+ D+
Sbjct: 272 NYGEDISNVNTTFFEASPNV-FGTFDHGINSFIPTEYLGTTLNNGASSNGSCVINYDNFG 330
Query: 459 HLYSSFSSFIGEIPLNLNINNAK 527
+ + S++ +I N N ++ K
Sbjct: 331 FMMGASSTYFNKIMRNFNDSSTK 353
>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
2|||Manual
Length = 228
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -2
Query: 742 HHQTNNSQQSFHDGVLTLQLMVYKYILHTHFTIISLC 632
HH + +Q+FHDG++ + + + + + SLC
Sbjct: 136 HHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLC 172
>SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 43
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 483 KMKNLNINATYHLFLLETVFSHHC 412
K K + I + LF++ FSHHC
Sbjct: 2 KRKIIAIGIFFRLFIIHIHFSHHC 25
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -2
Query: 511 FKFNGISPIKDEKL---EYKCNISSFLARNCIFTSLPFKTSVPEYCCTISLIPLV 356
++ + +S IK++ L + CNI + LA N I S+P +S Y C +L L+
Sbjct: 561 YQISTVSGIKNDPLFTLDQTCNIIAKLADNLIHPSVPIGSSA--YRCRRNLADLL 613
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/94 (20%), Positives = 45/94 (47%)
Frame = +3
Query: 297 ICKVDVEFSNGEENMTISQVTNGISEIVQQYSGTEVLNGSDVKIQFRARKDDMLHLYSSF 476
I ++D+ + + + +S++ I E+ + + L G V I+ ++ L +SF
Sbjct: 605 IIQLDISRRHLDSLIGLSELCPSIEELTLEGNEIAYLTGCPVTIRDLNAVENRLSSLTSF 664
Query: 477 SSFIGEIPLNLNINNAKYMSFGGDLKKITELKFE 578
S+ + L+++ N + ++ L + ELK +
Sbjct: 665 SNLLNLQYLDISYNQLEDLTGLSSLIHLRELKVD 698
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 706 DGVLTLQLMVYKYILHTHFTIISLCELT 623
D +L LQL + K+++ T I S ELT
Sbjct: 489 DELLNLQLKIRKFLMFTFHIIRSFSELT 516
>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 189
Score = 25.4 bits (53), Expect = 9.6
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = -2
Query: 694 TLQLMVY-KYILHTHFTIISLCELTANKKCICKHSNFQTNSNFNSVIFFKSPPNDMYFAL 518
+LQ VY K + +T I+L + I + F+T + F + P+++YF
Sbjct: 21 SLQAEVYGKVLTNTILPKINLLSYDTRARLISSNKTFETVVERDGSFTFPNVPDEIYFLR 80
Query: 517 L---IFKFNGISPIKDEKLEY 464
L ++F+ I +E + Y
Sbjct: 81 LESIDYEFSEFHIIINESIVY 101
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +2
Query: 545 RFEK----NHRIKI*ICLKIAMFANAFFVSC*LTETNYREMCMQDIFV 676
RFEK N+R+ I +K+ +FF++C T TN + + + + V
Sbjct: 397 RFEKRLNGNNRMHIKQLIKVVYNLKSFFLNCLETNTNSKVINVDSLLV 444
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -2
Query: 733 TNNSQQSFHDGVLTLQLMVYKYILHTHFTIISLC 632
++N ++SF + + ++Y+ H T ISLC
Sbjct: 90 SSNERESFENLIFEHACLIYRLACTYHTTAISLC 123
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = -2
Query: 613 KCICKHSNFQTNSNFNSVIFFKSPPNDMYFALLIFKFNGISPIKDEKLEYKCNISSFL 440
+CI K +N +++ + N ++ + S +MY ++ + ++ + L K +S +
Sbjct: 22 ECIVKFTNLRSSEDVNLLLCYASIHGEMYLDYVLVRVTEFDEVQRQGLLNKRTMSGLV 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,338
Number of Sequences: 5004
Number of extensions: 71454
Number of successful extensions: 165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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