Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_I17
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    22   5.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   5.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   6.9  

>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 512 KQIHIDFIKLSCSYINERYFQGAK 583
           K++  D +K SC+   ++  QGAK
Sbjct: 63  KRVLPDALKTSCAKCTDKQKQGAK 86


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 30  SFGTGVSSXNXLPTFDQYVSPSKNVTKPQPT 122
           S G G+S+     T D   SPS NV    P+
Sbjct: 90  SIGGGISASKRQRTDDWLSSPSGNVPPLTPS 120


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 633 HDFEKDASYFIAL 595
           HD E DASYF  L
Sbjct: 569 HDGEVDASYFCKL 581


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,599
Number of Sequences: 336
Number of extensions: 2204
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)