Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_I17
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369...    48   9e-06
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847...    46   3e-05
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86...    42   4e-04
10_08_0662 + 19662748-19662826,19662868-19663136,19664360-196645...    28   7.7  

>08_01_0417 -
           3692247-3692329,3692442-3692504,3693233-3693350,
           3694084-3694095
          Length = 91

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 29/77 (37%), Positives = 38/77 (49%)
 Frame = +2

Query: 104 DQAAAXVKNLKALPTYAQLLNLYAHXKQAXVGDADPANXPGLLYLKGXAKXDAWHXLAGT 283
           +Q A   K L    +    L LY   KQA VGD + A  PG+   +  AK DAW  + G 
Sbjct: 8   EQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTAR-PGIFAQRDRAKWDAWKAVEGK 66

Query: 284 SXEDAQKAYIEIVEGLI 334
           S E+A   YI  V+ L+
Sbjct: 67  SKEEAMSDYITKVKQLL 83


>03_05_0107 -
           20883353-20883627,20883739-20883801,20884608-20884725,
           20885012-20885023
          Length = 155

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 28/76 (36%), Positives = 38/76 (50%)
 Frame = +2

Query: 104 DQAAAXVKNLKALPTYAQLLNLYAHXKQAXVGDADPANXPGLLYLKGXAKXDAWHXLAGT 283
           ++ A  VK L    +    L LY   KQA VGD + +  PG+   +  AK DAW  + G 
Sbjct: 8   EEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVNTSR-PGIFAQRDRAKWDAWKAVEGK 66

Query: 284 SXEDAQKAYIEIVEGL 331
           S E+A   YI  V+ L
Sbjct: 67  SKEEAMSDYITKVKQL 82


>06_01_0108 -
           860080-860162,860276-860338,860857-860974,861481-861492
          Length = 91

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 27/81 (33%), Positives = 38/81 (46%)
 Frame = +2

Query: 92  KQKCDQAAAXVKNLKALPTYAQLLNLYAHXKQAXVGDADPANXPGLLYLKGXAKXDAWHX 271
           +++ ++ A   K L    +    L LY   KQA VG       PG+  LK   K DAW  
Sbjct: 4   QEEFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPVTTGR-PGIFNLKDRYKWDAWKA 62

Query: 272 LAGTSXEDAQKAYIEIVEGLI 334
           + G S E+A   YI  V+ L+
Sbjct: 63  VEGKSKEEAMADYITKVKQLL 83


>10_08_0662 +
           19662748-19662826,19662868-19663136,19664360-19664571,
           19665356-19665623,19665709-19666002
          Length = 373

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 324 STISM*AFWASSXEVPAXLCQASXLAXPFKYRRPGXLAGSA 202
           S++   A WAS   +P  L  A+ +A    YR PG   G A
Sbjct: 170 SSLGCHAAWASFKYIPHRLAGAAMMAPVINYRWPGLPRGLA 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,736,543
Number of Sequences: 37544
Number of extensions: 238270
Number of successful extensions: 409
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)