Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_I17
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003140-9|AAB54171.1| 86|Caenorhabditis elegans Acyl-coenzyme... 77 9e-15
Z46794-8|CAA86779.1| 385|Caenorhabditis elegans Hypothetical pr... 54 1e-07
Z68004-6|CAA91987.2| 116|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z92826-2|CAB07319.1| 266|Caenorhabditis elegans Hypothetical pr... 38 0.009
AL023828-1|CAA19448.1| 115|Caenorhabditis elegans Hypothetical ... 37 0.015
Z81120-7|CAB03343.2| 274|Caenorhabditis elegans Hypothetical pr... 29 2.3
U27312-8|AAZ32809.1| 219|Caenorhabditis elegans Hypothetical pr... 29 3.0
U00063-1|AAK18960.1| 146|Caenorhabditis elegans Acyl-coenzyme a... 29 3.0
AL132858-3|CAB60478.2| 391|Caenorhabditis elegans Hypothetical ... 28 6.9
AF381629-1|AAL12002.1| 223|Caenorhabditis elegans homeodomain p... 28 6.9
AF381628-1|AAL12001.1| 372|Caenorhabditis elegans homeodomain p... 28 6.9
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr... 27 9.1
>AF003140-9|AAB54171.1| 86|Caenorhabditis elegans Acyl-coenzyme a
binding proteinprotein 1 protein.
Length = 86
Score = 77.4 bits (182), Expect = 9e-15
Identities = 41/81 (50%), Positives = 50/81 (61%)
Frame = +2
Query: 104 DQAAAXVKNLKALPTYAQLLNLYAHXKQAXVGDADPANXPGLLYLKGXAKXDAWHXLAGT 283
D AAA VK LK P+ +LL LYA KQ VGD + + PG+ LKG AK AW G
Sbjct: 6 DDAAATVKTLKTSPSNDELLKLYALFKQGTVGD-NTTDKPGMFDLKGKAKWSAWDEKKGL 64
Query: 284 SXEDAQKAYIEIVEGLIASIG 346
+ +DAQKAY+ +VE LIA G
Sbjct: 65 AKDDAQKAYVALVEELIAKYG 85
>Z46794-8|CAA86779.1| 385|Caenorhabditis elegans Hypothetical
protein R06F6.9 protein.
Length = 385
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/78 (37%), Positives = 42/78 (53%)
Frame = +2
Query: 104 DQAAAXVKNLKALPTYAQLLNLYAHXKQAXVGDADPANXPGLLYLKGXAKXDAWHXLAGT 283
++A +K LK P L LY KQA GD PG++ G AK DAW+ L G
Sbjct: 30 EKAQKNLKTLKEEPDNDVKLQLYGLFKQATAGDVQ-GKRPGMMDFVGRAKYDAWNTLKGQ 88
Query: 284 SXEDAQKAYIEIVEGLIA 337
+ ++A+ Y ++V GLI+
Sbjct: 89 TQDEARANYAKLVGGLIS 106
>Z68004-6|CAA91987.2| 116|Caenorhabditis elegans Hypothetical
protein F47B10.7 protein.
Length = 116
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Frame = +2
Query: 92 KQKCDQAAAXVKNLKALPTYA----QLLNLYAHXKQAXVGDADPANXPGLLYLKGXAKXD 259
++K D A ++ L A Q L Y+ KQA +GD + + PG+ + K D
Sbjct: 4 QEKFDAAVEIIQKLPKTGPVATSNDQKLTFYSLFKQASIGDVN-TDRPGIFSIIERKKWD 62
Query: 260 AWHXLAGTSXEDAQKAYIEIVEGLIASI 343
+W L G S ++A++ YI+ + + I
Sbjct: 63 SWKELEGVSQDEAKERYIKALNDMFDKI 90
>Z92826-2|CAB07319.1| 266|Caenorhabditis elegans Hypothetical
protein C18D11.2 protein.
Length = 266
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/68 (33%), Positives = 36/68 (52%)
Frame = +2
Query: 161 LNLYAHXKQAXVGDADPANXPGLLYLKGXAKXDAWHXLAGTSXEDAQKAYIEIVEGLIAS 340
LN YA KQA G D P ++G K +AW+ L + ++A++AY++ + I
Sbjct: 28 LNFYALFKQATHGKCDLPK-PSFYDIQGVYKWNAWNKLDNMTMDEAKQAYVDSIVQKIRE 86
Query: 341 IGLKE*KT 364
+ KE KT
Sbjct: 87 V-QKEYKT 93
>AL023828-1|CAA19448.1| 115|Caenorhabditis elegans Hypothetical
protein Y17G7B.1 protein.
Length = 115
Score = 36.7 bits (81), Expect = 0.015
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +2
Query: 110 AAAXVKNLKALPTYAQLLNLYAHXKQAXVGD---ADPANXPGLLYLKGXAKXDAWHXLAG 280
AA ++ LK+ PT + L LYA KQA GD D P + G K AW G
Sbjct: 18 AAEEMRRLKSEPTDRERLKLYALYKQALHGDIPNEDVYPVPAGDEV-GRKKYAAWKSQKG 76
Query: 281 TSXEDAQKAYIEIVEGLIASIG 346
+ E + Y+ I E +I G
Sbjct: 77 ANSEKCRADYVAIAEEMIKKYG 98
>Z81120-7|CAB03343.2| 274|Caenorhabditis elegans Hypothetical
protein T12D8.3 protein.
Length = 274
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/85 (25%), Positives = 31/85 (36%)
Frame = +2
Query: 86 LSKQKCDQAAAXVKNLKALPTYAQLLNLYAHXKQAXVGDADPANXPGLLYLKGXAKXDAW 265
L + K D A + +L Y KQA G AD P K ++W
Sbjct: 27 LLEAKFDAATTRLPGFLTKIDQKTILKFYGLYKQAVEGPADSKKGPYWFETVARKKFNSW 86
Query: 266 HXLAGTSXEDAQKAYIEIVEGLIAS 340
+ S A +AY E++ L S
Sbjct: 87 LANSQMSRSRAMEAYCELMAQLDTS 111
>U27312-8|AAZ32809.1| 219|Caenorhabditis elegans Hypothetical
protein F26A1.15 protein.
Length = 219
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 233 YLKGXAKXDAWHXLAGTSXEDAQKAYIEIVEGL 331
++ G K AW+ G + E+A + Y+E V+ L
Sbjct: 156 WINGNEKWHAWNKCRGLTKEEASEQYVEAVQKL 188
>U00063-1|AAK18960.1| 146|Caenorhabditis elegans Acyl-coenzyme a
binding proteinprotein 4 protein.
Length = 146
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 161 LNLYAHXKQAXVGDADPANXPGLLYLKGXAKXDAWHXLAGTSXEDAQKAYIE 316
L +Y+ KQA G D P ++ K +AW+ L +A+ Y+E
Sbjct: 33 LQMYSLYKQATSGKCDTIQ-PYFFQIEQRMKWNAWNQLGNMDEAEAKAQYVE 83
>AL132858-3|CAB60478.2| 391|Caenorhabditis elegans Hypothetical
protein Y113G7A.6a protein.
Length = 391
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 3 AGRWSKTRCSFGTGVSSXNXLPTFDQYVSPSKNVTKPQPT 122
+G + T GTG S + + +VSP + TKP P+
Sbjct: 40 SGNFIPTPSLTGTGASQSSGSASSGNFVSPDETDTKPSPS 79
>AF381629-1|AAL12002.1| 223|Caenorhabditis elegans homeodomain
protein TTX-1 protein.
Length = 223
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 3 AGRWSKTRCSFGTGVSSXNXLPTFDQYVSPSKNVTKPQPT 122
+G + T GTG S + + +VSP + TKP P+
Sbjct: 3 SGNFIPTPSLTGTGASQSSGSASSGNFVSPDETDTKPSPS 42
>AF381628-1|AAL12001.1| 372|Caenorhabditis elegans homeodomain
protein TTX-1 protein.
Length = 372
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 3 AGRWSKTRCSFGTGVSSXNXLPTFDQYVSPSKNVTKPQPT 122
+G + T GTG S + + +VSP + TKP P+
Sbjct: 21 SGNFIPTPSLTGTGASQSSGSASSGNFVSPDETDTKPSPS 60
>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical protein
ZC84.6 protein.
Length = 1474
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 78 QYVSPSKNVTKPQPT*RT*KLFQLMPNSLTCMPIXNRPXLEMPI 209
QY+ P + KPQP +T + + P T N+ LEM +
Sbjct: 1397 QYMHPGRRRQKPQPVQKTKPVKNVKPTKTTLPCPPNQVLLEMEV 1440
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,697,787
Number of Sequences: 27780
Number of extensions: 206459
Number of successful extensions: 318
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -