Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_I14
         (793 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF273830-1|AAG15179.1|  598|Caenorhabditis elegans nuclear recep...    28   6.7  
AC006671-3|AAR30203.1|  235|Caenorhabditis elegans Nuclear hormo...    28   6.7  
AC006671-2|AAO21381.1|  459|Caenorhabditis elegans Nuclear hormo...    28   6.7  
AC006671-1|AAF39914.2|  593|Caenorhabditis elegans Nuclear hormo...    28   6.7  
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    28   8.8  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    28   8.8  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    28   8.8  

>AF273830-1|AAG15179.1|  598|Caenorhabditis elegans nuclear receptor
           NHR-88 protein.
          Length = 598

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 347 CSYCNRRKWLTXGCLRKWIKPNSMECXHLQRSIDKNK---DTNIDIVDAILMPEPN 505
           C YC  ++ LT G   + I+P+  +    Q++  K K   DTN   +DA L P PN
Sbjct: 93  CRYCRFQRCLTVGMEPEAIRPD-RDVIGKQKNPRKKKMKSDTNSGSIDASL-PSPN 146


>AC006671-3|AAR30203.1|  235|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 88, isoform c protein.
          Length = 235

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 347 CSYCNRRKWLTXGCLRKWIKPNSMECXHLQRSIDKNK---DTNIDIVDAILMPEPN 505
           C YC  ++ LT G   + I+P+  +    Q++  K K   DTN   +DA L P PN
Sbjct: 88  CRYCRFQRCLTVGMEPEAIRPD-RDVIGKQKNPRKKKMKSDTNSGSIDASL-PSPN 141


>AC006671-2|AAO21381.1|  459|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 88, isoform b protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 347 CSYCNRRKWLTXGCLRKWIKPNSMECXHLQRSIDKNK---DTNIDIVDAILMPEPN 505
           C YC  ++ LT G   + I+P+  +    Q++  K K   DTN   +DA L P PN
Sbjct: 88  CRYCRFQRCLTVGMEPEAIRPD-RDVIGKQKNPRKKKMKSDTNSGSIDASL-PSPN 141


>AC006671-1|AAF39914.2|  593|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 88, isoform a protein.
          Length = 593

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 347 CSYCNRRKWLTXGCLRKWIKPNSMECXHLQRSIDKNK---DTNIDIVDAILMPEPN 505
           C YC  ++ LT G   + I+P+  +    Q++  K K   DTN   +DA L P PN
Sbjct: 88  CRYCRFQRCLTVGMEPEAIRPD-RDVIGKQKNPRKKKMKSDTNSGSIDASL-PSPN 141


>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
           protein precursor protein.
          Length = 2272

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 341 ERCSYCNRRKWLTXGCLRKWIKPNSMECXHLQRS 442
           +RCS C +R W    C +K     S +C   Q+S
Sbjct: 629 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQS 662


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
           protein, isoforma protein.
          Length = 2175

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 341 ERCSYCNRRKWLTXGCLRKWIKPNSMECXHLQRS 442
           +RCS C +R W    C +K     S +C   Q+S
Sbjct: 532 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQS 565


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
           protein, isoformb protein.
          Length = 2186

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 341 ERCSYCNRRKWLTXGCLRKWIKPNSMECXHLQRS 442
           +RCS C +R W    C +K     S +C   Q+S
Sbjct: 543 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQS 576


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,830,076
Number of Sequences: 27780
Number of extensions: 262612
Number of successful extensions: 547
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)