Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_I14
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.5  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   3.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   4.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   4.3  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   5.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.7  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 537 SFTNLLVFRDELGSGIRIASTISIFVSLFLSIL 439
           SF ++LVF     SG +++ +ISI +SL +  L
Sbjct: 251 SFLSVLVFYLPSDSGEKVSLSISILLSLTVFFL 283


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 537 SFTNLLVFRDELGSGIRIASTISIFVSLFLSIL 439
           SF  +LVF     SG +++ +ISI +SL +  L
Sbjct: 255 SFLTVLVFYLPSDSGEKVSLSISILLSLTVFFL 287


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 326 MNISYERCSYCNRRKWLTXGCLRKWIK 406
           + I+  RC YC  +K +  G  R  ++
Sbjct: 113 LRINRNRCQYCRLKKCIAVGMSRDAVR 139


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 326 MNISYERCSYCNRRKWLTXGCLR 394
           + I+  RC YC  +K +  G  R
Sbjct: 64  LRINRNRCQYCRLKKCIAVGMSR 86


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +2

Query: 344 RCSYCNRRKWLTXGCLRKWIKPNSMECXHLQRS-IDKNKDTNIDI-VDAILMPE 499
           RC YC  +K L  G  R+ ++          +S ++     + D+ ++ IL  E
Sbjct: 161 RCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAE 214


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +2

Query: 344 RCSYCNRRKWLTXGCLRKWIKPNSMECXHLQRS-IDKNKDTNIDI-VDAILMPE 499
           RC YC  +K L  G  R+ ++          +S ++     + D+ ++ IL  E
Sbjct: 161 RCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAE 214


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
 Frame = +2

Query: 344 RCSYCNR---RKWLTXGCLRKWIKPNSMECXHLQRS 442
           +C  C +   R WL  G +R         C H  R+
Sbjct: 44  KCHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRA 79


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 458 DTNIDIVDAILMPEPNSSLNTNKF 529
           D   DI+  I +PEP    N  K+
Sbjct: 641 DAQFDIIQNIYIPEPQDIENIFKY 664


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,455
Number of Sequences: 438
Number of extensions: 3120
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)