Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_I13
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces pom... 193 3e-50
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 36 0.005
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy... 27 2.4
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 4.1
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 5.4
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 5.4
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 25 9.5
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.5
>SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 193 bits (470), Expect = 3e-50
Identities = 98/244 (40%), Positives = 147/244 (60%), Gaps = 8/244 (3%)
Frame = +1
Query: 91 KPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSERTRKLLKDIYDLKKPDAAYLSRKND 270
KP + K+ L +EPK +EG K +IFL+G S+ + +L DI+ LKKP + +KN+
Sbjct: 6 KPKNARTKRALEKREPKLVEGAKTAIFLRGNATSQISLDVLGDIHALKKPFSVNFQKKNN 65
Query: 271 FVPFEDSSLIEKLCYKKEAALFGVGSHSKKRPHNIVLGRTFDYGILDMIELGAEEYKAMS 450
+PFED+S +E K +AAL + +H+KKRPHN+ R F+Y +LDMIELG YK++
Sbjct: 66 ILPFEDASSLEFFSEKNDAALAVMATHNKKRPHNLTWVRFFNYRVLDMIELGIVNYKSIQ 125
Query: 451 EFHNIKVLAGSKPCLLFNGPAWELNQDLKRLKSLFSDFFHREKVETIRLQGLEHVLSFTA 630
F ++ G+KP +LF GP ++ + + +KSLF DFF E ++ + GL +V+ +A
Sbjct: 126 SFSATPIVPGTKPMILFQGPVFDAHPTYRHIKSLFLDFFRGEPIQKLDSAGLSYVIVVSA 185
Query: 631 TDD--------GLIYFRSYRISLKKSGQRTPRVELEEIGPSIDFKLRRTKLXSDDLYKEA 786
+ L++FR Y L K+ PRVELEE+GP IDF +RR + D+ +EA
Sbjct: 186 AEAQEDETKPLPLVHFRVYGTKLLKTKTNLPRVELEEMGPRIDFNIRRVQPAESDVLEEA 245
Query: 787 CKIP 798
K P
Sbjct: 246 LKKP 249
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 36.3 bits (80), Expect = 0.005
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = +1
Query: 415 IELGAEEYKAMSEFHNI-KVLAGSKPCLLFNGPAWELNQDLKRLKSLFSDFFHREKVETI 591
++ E M E + L GS+P L F+ ++ LK +K L F K
Sbjct: 122 VKFHVENLHTMDELNMTGNALKGSRPILSFD-KTFDTAPHLKVVKELLQQTFGIPKGARR 180
Query: 592 RLQGLEHVLSFTATDDGLIYFRSYRISLKKSGQRTPRVELEEIGP 726
++ V + T D G I+FR+Y I + + P V L EIGP
Sbjct: 181 SKPFIDRVCTLTIAD-GKIWFRNYEIRENEDKSKDP-VTLIEIGP 223
>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 722 PISSNSTLGVLWPLFLSDILYDLK*IKPSSV 630
P+SS + +G WP F++ IL+ I S V
Sbjct: 194 PLSSKTIVGYSWPYFIAKILFAFSIIFHSGV 224
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = -1
Query: 490 MV*NQPGLLYCEILTLPYILQHQVQSYPIFHNQKFYPKQCCGGASCCVNQHQTELPLFCN 311
+V ++PG +Y + +P + + SY HN ++ Q + C+ + L +CN
Sbjct: 574 LVIDKPGFVYHTLNDIPQLNSSTIGSYVHSHNPPYFDYQIRLKSYRCLISTLSSLFTWCN 633
Query: 310 IT 305
T
Sbjct: 634 QT 635
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 146 LKVLNKVSSFKAATRQKGQESY*RISMI*KSLTPLISAAKTILSHLKTVV 295
++ L ++ + +QKG R+S I S+T + A + HLK V
Sbjct: 307 IETLKELEDYIEDAKQKGITGVKRVSSINGSMTAIQGMADLVAEHLKAKV 356
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 716 SSNSTLGVLWPLFLSDILYDLK*IKPSSVAVKLRTCSNPCNLM 588
+S+ L LWP+ +S++L K +VA+ T + C L+
Sbjct: 1502 TSSKHLLPLWPIVVSELLIIFKSYCMPNVAISKETLLDACRLL 1544
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 385 RTFDYGILDMIELGAEEYKAMSEFHNIKVLAGSKPCLLFNGP 510
R FD ++ +++ +K +EF K+ GS+PC + P
Sbjct: 734 RFFDLN-MNEVDMPVGGFKTFNEFFYRKLKPGSRPCAFPDNP 774
>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 148
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 40 VFLKFNVNKMPVLQRIKKPTTRKGKKVLLSKEPKPIEGPKQSIFL 174
+F+ F + M L R+ TTR + L EPK I + FL
Sbjct: 17 LFIAFQILSMKALARMIPDTTRTCRGHFLVSEPKTIPCLHRCAFL 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,278,308
Number of Sequences: 5004
Number of extensions: 68710
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -