Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_I13
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0103 - 18137176-18137283,18137375-18137440,18137592-181378...   172   3e-43
05_06_0011 - 24841453-24841560,24841650-24841715,24841894-248421...    82   6e-16
12_01_0596 + 4867388-4867405,4869095-4869151,4869624-4869701,487...    29   5.7  

>01_05_0103 -
           18137176-18137283,18137375-18137440,18137592-18137828,
           18137914-18138159,18138483-18138686,18138781-18138852
          Length = 310

 Score =  172 bits (418), Expect = 3e-43
 Identities = 94/242 (38%), Positives = 140/242 (57%), Gaps = 6/242 (2%)
 Frame = +1

Query: 85  IKKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSERTRKLLKDIYDLKKPDAAYLSRK 264
           I+ P +++ K+ LL   PK +E  K+++ L G   S     +L D++ LK+ +A   S+K
Sbjct: 5   IRVPRSQRAKRELLKHAPKLVETGKKTLILHGTKTSAVLNSVLADLFHLKRDNAVKYSKK 64

Query: 265 NDFV-PFEDS--SLIEKLCYKKEAALFGVGSHSKKRPHNIVLGRTFDYGILDMIELGAEE 435
           ND + PFE    + +E    K + +L   GSHSKKRP+N+VLGRT+D+ I D++E+G E 
Sbjct: 65  NDNIRPFESGGETSLEFFSLKTDCSLIVYGSHSKKRPNNLVLGRTYDHHIYDLVEVGVEN 124

Query: 436 YKAMSEFHNIKVLA---GSKPCLLFNGPAWELNQDLKRLKSLFSDFFHREKVETIRLQGL 606
           YK++  +   K LA   GSKP   F G  +E  ++LK LK +  D F  E VE + L G+
Sbjct: 125 YKSIESYVYDKKLAPKLGSKPFFAFIGEHFESVEELKHLKEVLLDLFKGEVVENLNLAGV 184

Query: 607 EHVLSFTATDDGLIYFRSYRISLKKSGQRTPRVELEEIGPSIDFKLRRTKLXSDDLYKEA 786
           + V   TA     +Y     + LK+SG   PR+EL E+GPS+D  +RR +   + L KEA
Sbjct: 185 DRVFVCTAISPTTVYMMHCALRLKRSGTSIPRIELVEVGPSMDLVVRRHRYPVESLKKEA 244

Query: 787 CK 792
            K
Sbjct: 245 MK 246


>05_06_0011 -
           24841453-24841560,24841650-24841715,24841894-24842130,
           24842217-24842333,24842742-24842945,24843025-24843093
          Length = 266

 Score = 81.8 bits (193), Expect = 6e-16
 Identities = 42/105 (40%), Positives = 59/105 (56%)
 Frame = +1

Query: 478 GSKPCLLFNGPAWELNQDLKRLKSLFSDFFHREKVETIRLQGLEHVLSFTATDDGLIYFR 657
           GSKP   F G  +E  ++LK LK +  D F  E VE + L G++ V   TA     +Y  
Sbjct: 98  GSKPFFTFIGEHFESVEELKHLKEVLLDLFRGEVVENLNLAGVDRVFVCTAISPTTVYLM 157

Query: 658 SYRISLKKSGQRTPRVELEEIGPSIDFKLRRTKLXSDDLYKEACK 792
              + LK+SG   PR+EL E+GPS+D  +RR +  ++ L KEA K
Sbjct: 158 HCALRLKRSGTSIPRMELVEVGPSMDLVVRRHRYPAESLKKEAMK 202


>12_01_0596 +
           4867388-4867405,4869095-4869151,4869624-4869701,
           4870467-4870549,4870775-4870874,4871384-4871659,
           4872198-4872258,4872365-4872465
          Length = 257

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 436 YKAMSEFHNIKVLAGSKPCLLF-NGPAWELNQDL 534
           YKA+   ++ ++L+GS+P  +F    AW + +DL
Sbjct: 73  YKALERTYHYRLLSGSEPLSVFEKTSAWHIPEDL 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,276,422
Number of Sequences: 37544
Number of extensions: 412865
Number of successful extensions: 910
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)