Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_I13
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-7|AAF60765.1|  297|Caenorhabditis elegans Hypothetical ...   210   1e-54
Z81089-1|CAB03135.2|  957|Caenorhabditis elegans Hypothetical pr...    32   0.55 
U39855-4|AAA81083.1|  290|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AC024791-31|AAF60655.1|  181|Caenorhabditis elegans Hypothetical...    29   2.9  
U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical pr...    29   3.9  
L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical...    29   3.9  
AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical...    29   3.9  
AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical...    29   3.9  
AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical...    29   3.9  
Z81592-13|CAB76412.2|  421|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z78016-9|CAB76723.2|  421|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z75955-3|CAB00114.1|  461|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protei...    28   6.7  

>AC024810-7|AAF60765.1|  297|Caenorhabditis elegans Hypothetical
           protein Y54E10A.10 protein.
          Length = 297

 Score =  210 bits (512), Expect = 1e-54
 Identities = 103/239 (43%), Positives = 154/239 (64%)
 Frame = +1

Query: 82  RIKKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSERTRKLLKDIYDLKKPDAAYLSR 261
           R++K  T+KGK+VL+++  K +E  K+++F +G   +E     + D++D+KKP    + +
Sbjct: 3   RVEKIKTKKGKRVLVNRASKTVENDKKALFCRGAKTNEIISHAMMDLFDMKKPLTTKMDK 62

Query: 262 KNDFVPFEDSSLIEKLCYKKEAALFGVGSHSKKRPHNIVLGRTFDYGILDMIELGAEEYK 441
            N +  FED + I +   K + +LF +GS+SKK+P+ +  GRT+D  +LDM EL    YK
Sbjct: 63  HNPYHLFEDETPIVRAGSKFDTSLFVLGSNSKKKPNCLTFGRTYDGQLLDMAELRITSYK 122

Query: 442 AMSEFHNIKVLAGSKPCLLFNGPAWELNQDLKRLKSLFSDFFHREKVETIRLQGLEHVLS 621
           + S F   K+  GSKPC++  G A+E + D+KR+ +L  D+F   KV+T+RL+GLE V+ 
Sbjct: 123 SSSNFEAAKMTLGSKPCVILEGAAFESDGDMKRIGNLMVDWFRGPKVDTVRLEGLETVIV 182

Query: 622 FTATDDGLIYFRSYRISLKKSGQRTPRVELEEIGPSIDFKLRRTKLXSDDLYKEACKIP 798
           FTA D+  +  R YR  LKKS   TPRVEL E+GPSI F++ R KL  D L+K ACK P
Sbjct: 183 FTALDETNLALRVYRPMLKKSATATPRVELAEMGPSISFEVMRKKLADDALFKLACKKP 241


>Z81089-1|CAB03135.2|  957|Caenorhabditis elegans Hypothetical
           protein F53H4.1 protein.
          Length = 957

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
 Frame = +1

Query: 121 LLSKEPKPIEGPKQSIFLQGRNPSERTRKLLKDIYDLKKPDAAYLSRKNDFVPFEDSSLI 300
           L   +PK +EG +  ++L G    E ++K  +D  + K   AA    KN    FED  L+
Sbjct: 687 LFRLKPKGLEGSEIGVYLDGEIAREGSKKQKRDKVEKK---AAKKRMKNKLAGFEDKKLL 743

Query: 301 ------EKLCYKKEAALFGVGSHSKKRPHNIVLGRTFD 396
                 +KL   +E ++    S S  R   + + ++ D
Sbjct: 744 LSLFDDDKLVAMREHSISLQNSSSMNRIEKMKMRKSID 781


>U39855-4|AAA81083.1|  290|Caenorhabditis elegans Hypothetical
           protein F18G5.5 protein.
          Length = 290

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 741 FEIN*RTYFFQLHSGCSLATFLK*YSVRSEVDQAIISSRETEDM 610
           +E+  + YFFQ HS C +   +    V +   Q I+S+   ED+
Sbjct: 111 YEVALQKYFFQSHSECGITPEVTPIDVSNGTTQVIVSNSTIEDV 154


>AC024791-31|AAF60655.1|  181|Caenorhabditis elegans Hypothetical
           protein Y47G6A.3 protein.
          Length = 181

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +1

Query: 154 PKQSIFLQGRNPSERTRKLLKDIYDLKKPDAAYLSRKNDFVPFEDSSLIEKLCYKKE 324
           PK  + L    P  R   +L DI+ L K  +A     ND +P +    I+++  KKE
Sbjct: 74  PKLKMSLSRTIP--RGTSMLDDIWKLLKEPSALFDNANDLLPGQKEERIDRMNEKKE 128


>U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical
           protein K03C7.1 protein.
          Length = 867

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 88  KKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSE 195
           KKPT +   K L  +EPKP E PK +   + + P E
Sbjct: 320 KKPTDKPKPKDLPKEEPKPAEPPKPAAPKKWKPPWE 355


>L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical
           protein K12H4.3 protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 1/196 (0%)
 Frame = +1

Query: 166 IFLQGRNPSERTRKLLKDIYDLKKPDAAYLSRKNDFVPFEDSSLIEKLCYKKEAALFGVG 345
           + L  R    RTR L+KDI DL  P A   S+ +        + I ++    +   F   
Sbjct: 66  LVLCSRGADVRTRYLMKDIKDLL-PHAKGDSKLDQQKSLNVLNEIAEMKNCTKVMYF--- 121

Query: 346 SHSKKRPHNIVLGRTFDYGILDMIELGAEEYKAMSEFH-NIKVLAGSKPCLLFNGPAWEL 522
             S+KR    +     + G    I+        M E   +   L  S+P L F+  A++ 
Sbjct: 122 -ESRKRKDTYLWMSNVEKG--PSIKFLVHNVHTMKELKMSGNCLRASRPVLSFDD-AFDK 177

Query: 523 NQDLKRLKSLFSDFFHREKVETIRLQGLEHVLSFTATDDGLIYFRSYRISLKKSGQRTPR 702
              LK +K++                 ++HV +F+  +   I+FR+++I + +S      
Sbjct: 178 KPQLKLIKAVLMQTLGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNFQI-VDES------ 230

Query: 703 VELEEIGPSIDFKLRR 750
           ++L+E+GP    ++ R
Sbjct: 231 LQLQEVGPRFVLEMVR 246


>AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17d protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 292 SLIEKLCYKKE--AALFGVGSHSKKRPHNIVLGRTFDYGILD 411
           S +E++CY     A+ +    H   +P N +LG TF++  +D
Sbjct: 114 STLEQMCYVAAYAASNYSTTCHRTNKPFNPLLGETFEFDRMD 155


>AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17c protein.
          Length = 842

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 292 SLIEKLCYKKE--AALFGVGSHSKKRPHNIVLGRTFDYGILD 411
           S +E++CY     A+ +    H   +P N +LG TF++  +D
Sbjct: 507 STLEQMCYVAAYAASNYSTTCHRTNKPFNPLLGETFEFDRMD 548


>AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17b protein.
          Length = 627

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 292 SLIEKLCYKKE--AALFGVGSHSKKRPHNIVLGRTFDYGILD 411
           S +E++CY     A+ +    H   +P N +LG TF++  +D
Sbjct: 292 STLEQMCYVAAYAASNYSTTCHRTNKPFNPLLGETFEFDRMD 333


>AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17a protein.
          Length = 766

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 292 SLIEKLCYKKE--AALFGVGSHSKKRPHNIVLGRTFDYGILD 411
           S +E++CY     A+ +    H   +P N +LG TF++  +D
Sbjct: 431 STLEQMCYVAAYAASNYSTTCHRTNKPFNPLLGETFEFDRMD 472


>Z81592-13|CAB76412.2|  421|Caenorhabditis elegans Hypothetical
           protein R186.6 protein.
          Length = 421

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 76  LQRIKKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSERTRKLLK 216
           L R+++   R  KKV +   P PI  P     +   NP   T K  K
Sbjct: 43  LGRVRRSERRMAKKVPMMATPPPIPPPMTPTHIAIHNPKNSTSKRWK 89


>Z78016-9|CAB76723.2|  421|Caenorhabditis elegans Hypothetical
           protein R186.6 protein.
          Length = 421

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 76  LQRIKKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSERTRKLLK 216
           L R+++   R  KKV +   P PI  P     +   NP   T K  K
Sbjct: 43  LGRVRRSERRMAKKVPMMATPPPIPPPMTPTHIAIHNPKNSTSKRWK 89


>Z75955-3|CAB00114.1|  461|Caenorhabditis elegans Hypothetical
           protein R07B7.5 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/70 (21%), Positives = 32/70 (45%)
 Frame = +1

Query: 352 SKKRPHNIVLGRTFDYGILDMIELGAEEYKAMSEFHNIKVLAGSKPCLLFNGPAWELNQD 531
           ++ +P  +V  +   +   D + L  +   AM  F+   +  G + CL+F+    E   D
Sbjct: 289 NRVKPQPLVSIKCSPHSFFDNLVLMGDAAHAMVPFYGQGMNCGFEDCLVFSETLEEYGND 348

Query: 532 LKRLKSLFSD 561
           + +   ++SD
Sbjct: 349 IAKAVKVYSD 358


>U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protein
           111 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 406 IFHNQKFYPKQCCGGASCCVNQHQTELPLFCNITSQSNYC 287
           +F N K +  +     S  V Q +++LP  CN  SQ N C
Sbjct: 61  VFLNDKKFKSELLVSNSATVRQKRSDLPAHCNCLSQ-NQC 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,120,095
Number of Sequences: 27780
Number of extensions: 390029
Number of successful extensions: 948
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)