Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_I12
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical...    29   4.4  
Z93379-4|CAB07588.1|  306|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U64858-5|AAB18284.1|  409|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ...    28   7.6  
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel...    28   7.6  
AF038623-8|AAB94160.2|  631|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical
           protein F57C7.1b protein.
          Length = 1087

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
 Frame = +3

Query: 174 VHVNGLVIA-MMPAESFAESLLSAM----PDLEELLESEGINQLQQQXXXXXXXXXXXXX 338
           V VN + +A   PAE+ A+S  S +    P    ++E+  +++ +++             
Sbjct: 45  VQVNDIAVAEASPAETDAKSSASPVSGPEPPTSAVVENRDLDEFKKESGSNDDKQEEIN- 103

Query: 339 EEKPQTESEVLATSENPKP-----TESAAPLSDISIKSDTPHNKEASVNKQKRPQ 488
           E+K   E  V   +E+        T+     SD S   D  H+K  SV+  ++PQ
Sbjct: 104 EDKDSNEETVFQQTESGSADVVDKTDVKQKDSDSSADDDHSHSKSGSVHSPQKPQ 158


>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical
           protein F57C7.1a protein.
          Length = 1209

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
 Frame = +3

Query: 174 VHVNGLVIA-MMPAESFAESLLSAM----PDLEELLESEGINQLQQQXXXXXXXXXXXXX 338
           V VN + +A   PAE+ A+S  S +    P    ++E+  +++ +++             
Sbjct: 45  VQVNDIAVAEASPAETDAKSSASPVSGPEPPTSAVVENRDLDEFKKESGSNDDKQEEIN- 103

Query: 339 EEKPQTESEVLATSENPKP-----TESAAPLSDISIKSDTPHNKEASVNKQKRPQ 488
           E+K   E  V   +E+        T+     SD S   D  H+K  SV+  ++PQ
Sbjct: 104 EDKDSNEETVFQQTESGSADVVDKTDVKQKDSDSSADDDHSHSKSGSVHSPQKPQ 158


>AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical
           protein F36H12.3 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 339 EEKPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASV 467
           EEK + E +V      PKP  S  P  D+  K+D    K+ ++
Sbjct: 207 EEKKEDEKKVEPKPGEPKPHISIEPPGDLMFKADQQEQKKLTL 249


>Z93379-4|CAB07588.1|  306|Caenorhabditis elegans Hypothetical
           protein F21H7.5 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 369 LATSENPKPTESAAPLSDISIKSDTPHNKEAS 464
           L  ++N  PT + A +SD+SIKSD+    E S
Sbjct: 142 LNKAKNLCPTVNQADVSDVSIKSDSGEKSEKS 173


>U64858-5|AAB18284.1|  409|Caenorhabditis elegans Hypothetical
           protein C16D9.4 protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +3

Query: 342 EKPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQ 476
           EKPQ  S+V+ TS   KP +S    S  S     P N   S+ KQ
Sbjct: 85  EKPQRSSKVINTSSESKPAQSQIAASQRS-SPGYPQNL-TSIGKQ 127


>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
           helicase-4 protein.
          Length = 1156

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -3

Query: 412 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 302
           GA +S GF      +TS S   F SG GG+ T  GFG
Sbjct: 360 GATESSGF---PTKETSTSGGTFGSGFGGKPTSTGFG 393


>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
           helicase protein 4 protein.
          Length = 1156

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -3

Query: 412 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 302
           GA +S GF      +TS S   F SG GG+ T  GFG
Sbjct: 360 GATESSGF---PTKETSTSGGTFGSGFGGKPTSTGFG 393


>AF038623-8|AAB94160.2|  631|Caenorhabditis elegans Hypothetical
           protein T08B6.4 protein.
          Length = 631

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 378 SENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRP 485
           S N    +S   + D+ +++  P N E ++ K KRP
Sbjct: 158 SNNMTGKDSNKDVKDVDVEAANPENPETNICKDKRP 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,859,122
Number of Sequences: 27780
Number of extensions: 254142
Number of successful extensions: 859
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)