Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_I10
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    98   5e-22
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    97   1e-21

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 97.9 bits (233), Expect = 5e-22
 Identities = 44/84 (52%), Positives = 49/84 (58%)
 Frame = +2

Query: 29  MTKGTSSFGKRRNKTHTLCXRCGXSSYHIXKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 208
           MTKGT SFG R NK+HT+C RCG  S+HI KS CA CGYPAAK RSY+W  KA       
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 209 XXXXXXXXXXXXXXXNGFKEGKPT 280
                          NGF+ GKPT
Sbjct: 61  TGRMSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 96.7 bits (230), Expect = 1e-21
 Identities = 45/91 (49%), Positives = 50/91 (54%)
 Frame = +2

Query: 29  MTKGTSSFGKRRNKTHTLCXRCGXSSYHIXKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 208
           MTKGT SFG R NK+HT+C RCG  S+HI KS CA CGYPAAK RSY+W  KA       
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 209 XXXXXXXXXXXXXXXNGFKEGKPTPPKKAVA 301
                          NGF+ GKP     A A
Sbjct: 61  TGRMSYLKKVHRSFKNGFRSGKPAAAVAASA 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,210,317
Number of Sequences: 5004
Number of extensions: 18069
Number of successful extensions: 33
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)