Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_I09
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa...    46   3e-06
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   1.2  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    26   2.9  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    25   5.0  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   6.7  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   6.7  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    24   8.8  

>SPBP19A11.01 |||glycine decarboxylase complex subunit
           H|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 169

 Score = 45.6 bits (103), Expect = 3e-06
 Identities = 17/54 (31%), Positives = 33/54 (61%)
 Frame = +3

Query: 42  GTVTEKNKDVXDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEEYKKFLKTD 203
           GTVT  N+ + D P  +++S  ++GW+ ++K+    E+  L+ +E Y +F K +
Sbjct: 112 GTVTSINESLGDSPDKVSSSPEEEGWICKIKLSSPDELKSLLNDESYAQFCKEE 165


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -3

Query: 199 VFKNFLYSSSVMRSFISLCLIIFNLNNHPLS*QDVFISAGLSXTSLF 59
           V  NF +S  ++  F+  C++++  NN P    +V  +A ++ + LF
Sbjct: 465 VLGNFDFSGYILNEFVKDCVVVYLENNDP----EVRKTASITCSQLF 507


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +3

Query: 90  INTSCYDKGWLFRLKIIKQSEINDLMTEEEYKKFLKTDAEKPE*FKLN 233
           INTS + KGW        Q  + +LM E+  +  L  D+  P    LN
Sbjct: 211 INTSAFRKGW---KTAYPQQRLLELMVEQGAQLTLSDDSHGPHQVGLN 255


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 224 KLFWFLSICFQKFLVLFFSHEIIYL 150
           KL WFL+  +   LVL     I+YL
Sbjct: 399 KLLWFLNYGYTDILVLILMLTILYL 423


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -2

Query: 287 VPLSIKKQRFNI*NK*PLIQLKLFWFLSICFQKFL 183
           +P+S+  +  ++ N    +   + WFL  CF +F+
Sbjct: 789 LPVSVLSKDSDLVNSVSYLHNSMEWFLQRCFSRFM 823


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 9   RLLVKSILHYLGTVTEKNKDVXDKPALINTSCYDK 113
           RL   S+  Y+G ++ K   +  KPA+     Y K
Sbjct: 163 RLKASSMADYIGVLSSKLACIISKPAVKTPEIYSK 197


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 236 LIQLKLFWFLSICFQKFLVLFFSHEIIYLALLNY 135
           L+ +KL +   ICF   L   F + I+YL L  Y
Sbjct: 357 LVPMKLLFTEPICFLITLYSSFVYAILYLLLEAY 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,152,052
Number of Sequences: 5004
Number of extensions: 20330
Number of successful extensions: 55
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)