Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_I09
         (435 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12241| Best HMM Match : GCV_H (HMM E-Value=0)                       52   3e-07
SB_57602| Best HMM Match : GCV_H (HMM E-Value=0)                       40   9e-04
SB_1476| Best HMM Match : RVT_1 (HMM E-Value=5.49309e-43)              27   6.7  
SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_12241| Best HMM Match : GCV_H (HMM E-Value=0)
          Length = 178

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 20/56 (35%), Positives = 36/56 (64%)
 Frame = +3

Query: 42  GTVTEKNKDVXDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEEYKKFLKTDAE 209
           G +TE N  + + P+LIN S Y  GW+ ++++   SE++DL+ EE YK+ +  + +
Sbjct: 122 GKITEINSQLEEDPSLINKSPYGDGWIVKMELSNPSELDDLLDEEAYKELVAQEED 177


>SB_57602| Best HMM Match : GCV_H (HMM E-Value=0)
          Length = 126

 Score = 39.9 bits (89), Expect = 9e-04
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +3

Query: 42  GTVTEKNKDVXDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEEYKKFL 194
           G + E N  +   P  +N+  Y  GW+ ++KI   S+I  L++ E+Y   +
Sbjct: 74  GEIIEFNDSLETTPETVNSDPYGDGWMVKIKISDNSQIESLLSSEDYSALI 124


>SB_1476| Best HMM Match : RVT_1 (HMM E-Value=5.49309e-43)
          Length = 1078

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 220  YSGFSASVFKNFLYSSSVMRSFIS 149
            +SG+S S F NF YSS + ++F+S
Sbjct: 979  FSGYS-SCFVNFFYSSCLPKAFVS 1001


>SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 202 SVFKNFLYSSSVMRSFISLCLIIFNLNNHPLS*QDVFISAGLSXT 68
           S F  FLY+++ +  FISL  +   +   PL+  ++F++  L  T
Sbjct: 326 SSFATFLYTATTVAVFISLTTVA--VTGEPLTLYNIFMTIALMRT 368


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,739,208
Number of Sequences: 59808
Number of extensions: 118913
Number of successful extensions: 206
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)