Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_I07
         (864 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)                  29   4.9  
SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08)                   29   6.5  

>SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
          Length = 609

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = -2

Query: 323 FIAESG-PDERVHLCHVSTQPKQPTCRCC*Y*HHLNNPS---VWSFRCEDGANNTNHTPK 156
           F+ ++G P + V +  V  + +QP+C+ C Y H   +P+    +   C+   + T H  K
Sbjct: 98  FVPQTGVPSKTVSVQPVQVKKEQPSCKFCGYRHSFAHPTRCPAFKRNCKI-CSKTGHFAK 156

Query: 155 DGENEDRDKGVAH 117
             +N+ +     H
Sbjct: 157 MCKNKQKKDPEVH 169


>SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08)
          Length = 690

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 718 NRKQGLIKEQLRMPDL*I*EKRKLLLQSKFDMTVP 614
           +RKQ  I  Q +M DL   E +KLL + K+D  VP
Sbjct: 75  HRKQQQIIRQKQMIDLCRTEGQKLLFEGKYDRAVP 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,255,327
Number of Sequences: 59808
Number of extensions: 532774
Number of successful extensions: 1070
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)