Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_I06
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.18 |||human Leydig cell tumor 10 kDa protein homolog|S...    28   1.2  
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    26   3.6  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   4.8  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   6.3  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    25   8.4  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    25   8.4  

>SPCC24B10.18 |||human Leydig cell tumor 10 kDa protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 93

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +2

Query: 248 KRPTVHQYLTQTLNIRNRFLIDQIARKLEYQMKRATLRQRLG 373
           K  T++  +T+TLN+RN  LI  IA +   Q+ + T+ + LG
Sbjct: 43  KDHTINANITKTLNVRNEKLIAGIASQ---QVGKLTITKALG 81


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +2

Query: 74  KLASPKIFVYRILVCSYRGEANMVIEKLHGLQATSITLNDRFTL----LSTAGTDRAAMR 241
           +L   ++  Y I+V S     N+ IEKL  +  +S  L + +TL    L+ + T+  A R
Sbjct: 86  ELVQHRVRYYEIIVKSILKSLNIPIEKLRFVIGSSYQLKEDYTLDNFRLAASTTEHTARR 145


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 198 NLSFRVILVACRPCNFSITIF 136
           N  + +I +A  PCNFS ++F
Sbjct: 39  NRLYEIISIALNPCNFSKSLF 59


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -1

Query: 316 LVNQETVSYVQGLCKVLMYGRTFFHAHSSAISSGSREQSKSIVQGNTG 173
           +++  TVS   G C ++    T  H  SS +++   E    ++  N G
Sbjct: 284 IISSLTVSLFMGFCIMITIAGTMGHDFSSILNTPYGEPVSQVLYNNLG 331


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 431 SSSSGRCSDYRTDGMVLDPVQAVDVMSPASSDT 333
           SSSS   S+Y +  + +  V + D   P+SS T
Sbjct: 81  SSSSSTSSEYSSSSIPITTVSSSDSFIPSSSQT 113


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +2

Query: 125 RGEANMVIEKLHGLQATSITLNDRFTLLSTAGTD--RAAMRMKKRPTVHQYLTQTLNIRN 298
           +GE N+V ++L  L +  +    +  L + AG D    A+++ KR  V++ + +      
Sbjct: 451 QGEENLVFKRLRMLLSVIMLRRTKTLLEANAGKDGTGGALKLSKR-LVYKVICK-FEESE 508

Query: 299 RFLIDQIARKLEYQMKRATLRQRLG 373
           R     +AR +E  M       +LG
Sbjct: 509 RDFYSNLARNMERTMSNFVNSGKLG 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,469
Number of Sequences: 5004
Number of extensions: 42494
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)