Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_I05
         (936 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.28 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   2.6  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.4  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   6.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   6.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 680  VLRAVNRVLYGTSKPVPK 733
            +LR +NRVL G +KP PK
Sbjct: 2181 LLRTINRVLRGYAKPDPK 2198


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -1

Query: 267 GSTGVRGD-FGRGEDIS 220
           G   +RGD FGRG+D S
Sbjct: 553 GGRDIRGDDFGRGQDFS 569


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 13/48 (27%)
 Frame = -3

Query: 412 RGNLWCSWTA-------------WRINSIFPFSLYILNFFNPFFAPYC 308
           RG+LW SW               W +N+     L   +FF  FF  YC
Sbjct: 380 RGDLWLSWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFFQQFFHCYC 427


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 389 PTAPEIPPEEY 421
           PT P+IPP E+
Sbjct: 209 PTVPKIPPAEF 219


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 389 PTAPEIPPEEY 421
           PT P+IPP E+
Sbjct: 209 PTVPKIPPAEF 219


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,985
Number of Sequences: 336
Number of extensions: 4212
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26271982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)