Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_I02
(834 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 47 3e-06
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom... 30 0.35
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 28 1.4
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|... 28 1.9
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 27 2.5
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 27 4.3
SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subun... 26 7.6
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 7.6
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 26 7.6
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 26 7.6
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 47.2 bits (107), Expect = 3e-06
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +1
Query: 241 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVN 354
VS+PGK IL GEH+VVYG TA+A ++ LRS ++ N
Sbjct: 7 VSSPGKTILFGEHAVVYGATALAAAVSLRSYCKLQTTN 44
Score = 35.1 bits (77), Expect = 0.012
Identities = 19/69 (27%), Positives = 38/69 (55%)
Frame = +2
Query: 542 LHLIKPNFDSLPNNQKNSLRSFLYVFSGIFGSTYLPVKSMDISMGSELTIGAGTGSSASF 721
L L++ + L N + + S + +F S P + +++ S++ +GAG GSSA+
Sbjct: 85 LDLLQGLGELLKNEENGLIHSAMLCTLYLFTSLSSPSQGCTLTISSQVPLGAGLGSSATI 144
Query: 722 AVCLAGALI 748
+V +A +L+
Sbjct: 145 SVVVATSLL 153
>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 347
Score = 30.3 bits (65), Expect = 0.35
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 650 VKSMDISMGSELTIGAGTGSSASFAVCLAGALIQLLKLKSSSGNFD 787
V+ M + G++L I +G +FAV LA AL + SS+ N D
Sbjct: 158 VRQMKVKPGTKLVIEGASGGVGTFAVALAKALECEVTTISSTENLD 203
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 446 ILNWHQGITGKFSWR-LPHKIDHDYHLRRVEEYLHLIK 556
++NWH + SWR + K D +L V Y HLI+
Sbjct: 453 LMNWHYKLPDTISWRTIDLKKDRIPNLCAVSLYYHLIR 490
>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 539 YLHLIKPNFDSLPN-NQKNSLRSFLYVFSGIF 631
+LH + NF P Q+N + SFLY FS +
Sbjct: 89 FLHAMAANFPKNPTPTQQNDMSSFLYNFSKFY 120
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 413 FHWSRQSKVCSILNWHQGIT--GKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPN 580
FHW+ C+ L + GKF + L +D+ + +E + PNFDS N
Sbjct: 37 FHWA-----CTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGN 89
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -3
Query: 430 LSAPMEWSPVDPRTANVCGLLVRVECLLPLSLW 332
L P+ DPR + L EC LP S+W
Sbjct: 179 LHRPLSAQSTDPRPTRIFVLGATKECSLPPSIW 211
>SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subunit
2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 72
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 719 FAVCLAGALIQLLKLKSSSGNFD 787
F +CL G + LL +KSS D
Sbjct: 49 FGICLIGTFVSLLMIKSSKKKSD 71
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 395 WIYRRPFHWSRQSKVCSI-LNWHQGITGKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFD 568
W RR Q + +I ++W G G F+ PHKID + ++ ++I NF+
Sbjct: 1455 WKERRHLDQCLQQLLENIEISWLGGFKGIFN---PHKIDTSLFAKFSSQFQNIIAKNFN 1510
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 494 PHKIDHDYHLRRVEEYLH 547
P IDHD H++R+ E L+
Sbjct: 22 PDPIDHDLHVQRLRELLY 39
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +2
Query: 491 LPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKNS 595
L K+ + + ++ L++P+ LPN KN+
Sbjct: 1790 LDQKLSYQFKFENSVKFFRLMQPSLGVLPNTNKNT 1824
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,686,808
Number of Sequences: 5004
Number of extensions: 82316
Number of successful extensions: 269
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -