Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_H24
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 193 2e-50
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 188 8e-49
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 151 8e-38
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 54 2e-08
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 38 0.002
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 37 0.003
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 32 0.079
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 32 0.10
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 31 0.18
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 29 0.56
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 29 0.74
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 29 0.98
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 27 2.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.0
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb... 27 3.0
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 27 3.0
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.9
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 6.9
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 26 6.9
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p... 25 9.1
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 25 9.1
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 25 9.1
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 193 bits (471), Expect = 2e-50
Identities = 93/142 (65%), Positives = 112/142 (78%), Gaps = 2/142 (1%)
Frame = +3
Query: 354 LETHEGCTHEVAIPPNQEYAPLLPLTTE--PVKQYSFILDPFQKEAILCIDNLQSVLVSA 527
+E H+V+IPPN +Y P+ + P + Y F LDPFQ +I CI+ +SVLVSA
Sbjct: 161 VELRHQVRHQVSIPPNYDYVPISKHKSPIPPARTYPFTLDPFQAVSIACIERQESVLVSA 220
Query: 528 HTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVTINPS 707
HTSAGKTVVAEYA+A SL++KQRVIYT+PIKALSNQKYRE EF DVGL+TGDVTINP
Sbjct: 221 HTSAGKTVVAEYAVAQSLRDKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDVTINPD 280
Query: 708 ASCLIMTTEILRNMLYRGSEIM 773
A+CL+MTTEILR+MLYRGSE+M
Sbjct: 281 ATCLVMTTEILRSMLYRGSEVM 302
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 188 bits (458), Expect = 8e-49
Identities = 92/135 (68%), Positives = 110/135 (81%), Gaps = 3/135 (2%)
Frame = +3
Query: 378 HEVAIPPNQEYAPL---LPLTTEPVKQYSFILDPFQKEAILCIDNLQSVLVSAHTSAGKT 548
H+V +P + +Y PL +P + P K Y F LDPFQ AI C++ ++SVLVSAHTSAGKT
Sbjct: 96 HKVVVPDDYDYIPLNKHIP-SDPPAKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGKT 154
Query: 549 VVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVTINPSASCLIMT 728
V+AEYAIA +LKN+QRVIYT+PIK+LSNQKYRE EF DVGL+TGDV+INPSASCLIMT
Sbjct: 155 VIAEYAIAQALKNRQRVIYTSPIKSLSNQKYRELLSEFGDVGLMTGDVSINPSASCLIMT 214
Query: 729 TEILRNMLYRGSEIM 773
TEILR MLY+ SEIM
Sbjct: 215 TEILRAMLYKNSEIM 229
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 151 bits (367), Expect = 8e-38
Identities = 74/141 (52%), Positives = 98/141 (69%)
Frame = +3
Query: 351 TLETHEGCTHEVAIPPNQEYAPLLPLTTEPVKQYSFILDPFQKEAILCIDNLQSVLVSAH 530
TL H+ + + + L E + F LD FQKEAI ++ SV V+AH
Sbjct: 244 TLNLHKQPDYAHVVDSSAPIENFQQLVPEMALDFPFELDNFQKEAIYHLEMGDSVFVAAH 303
Query: 531 TSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVTINPSA 710
TSAGKTVVAEYAIAL+ K+ + IYT+PIKALSNQK+R+F +F DVG++TGDV +NP
Sbjct: 304 TSAGKTVVAEYAIALAQKHMTKAIYTSPIKALSNQKFRDFKHKFEDVGILTGDVQVNPEG 363
Query: 711 SCLIMTTEILRNMLYRGSEIM 773
SCL+MTTEILR+MLYRG++++
Sbjct: 364 SCLLMTTEILRSMLYRGADLI 384
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 54.0 bits (124), Expect = 2e-08
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 13/118 (11%)
Frame = +3
Query: 438 PVKQYSFILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQR--VIYTT 611
P + +F D +Q+E + +D +SV V A TS+GKT ++ YA+ L++ VIY
Sbjct: 728 PDSRVAFDPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVA 787
Query: 612 PIKALSNQ----KYREFSEEFHDVG-----LITGDVTINPSASCLIMTT--EILRNML 752
P KAL NQ Y F++ + G + T D IN +C ++ T +L++ML
Sbjct: 788 PTKALVNQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITVPHVLQSML 845
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +3
Query: 510 SVLVSAHTSAGKTVVAEYAIALSLKN--KQRVIYTTPIKALSNQKYREF 650
++ V A T +GKT+ AE A +L N K +V+Y P+KAL ++ +++
Sbjct: 1152 NIFVGAPTGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDW 1200
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 510 SVLVSAHTSAGKTVVAEYAIA--LSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVG 674
SV + A +GKTV AE A+ S ++ +Y PI+ + +++Y E+ +F D+G
Sbjct: 1382 SVFIGAPNGSGKTVCAELALLHHWSQEDYGTAVYIAPIQEIVDRRYEEWYGKFSDLG 1438
Score = 28.7 bits (61), Expect = 0.98
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Frame = +3
Query: 507 QSVLVSAHTSAGKTVVAEYAIALSLKNKQR-----------VIYTTPIKALSNQKYREFS 653
+++L+ A T AGKT VA I L+ R ++Y P+KAL + FS
Sbjct: 536 ENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFS 595
Query: 654 EEFHDVGLITGDVT 695
+ + ++T
Sbjct: 596 KRLTPYNIRVAELT 609
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 32.3 bits (70), Expect = 0.079
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Frame = +3
Query: 63 NIENLQSYLFKMSDINSLFDCFDETPITE--AAIQLPNVKNVEKPKLEELTAAGNKRAHD 236
N+E + L K++++N + D + +E A QL +K V + LE++ + K + D
Sbjct: 258 NVEETKHLLEKLTEVNVMCDRHMDAISSEELACHQLTQLKKVVQT-LEDIYSEHKKVSED 316
Query: 237 --DIQYADTSVSKKPREEEEDSELITDINVDLLQSRIVIHTLETHEGCTHEVAIPPNQEY 410
D ++ + +++ + + T++NVDLL V E H+ H V+ Q++
Sbjct: 317 VKDQRFLE-AINGINSIVTQLKKKSTELNVDLLSLPSVKSLREEHKVLYHTVSQSVVQQF 375
Query: 411 APLLPLTTEPVKQYSFILD 467
+ L T + ++S ILD
Sbjct: 376 SKFL---TSDMHKFSTILD 391
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 31.9 bits (69), Expect = 0.10
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +3
Query: 468 PFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYRE 647
P Q+EAI + N + V+ A T +GKT + L N + + Y +
Sbjct: 71 PIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAY-Q 129
Query: 648 FSEEFHDVG 674
SE+F +G
Sbjct: 130 ISEQFEAIG 138
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 31.1 bits (67), Expect = 0.18
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 75 LQSYLFKMS-DINSLFDCFDETPITEAAIQLPNVKNVEKPKLE 200
L+S L+ + DINS+ D D+T +TE LPN ++ P LE
Sbjct: 1191 LESLLYGVDRDINSVMDALDKTYMTEVIQNLPN--GLDTPLLE 1231
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 29.5 bits (63), Expect = 0.56
Identities = 21/87 (24%), Positives = 37/87 (42%)
Frame = +3
Query: 69 ENLQSYLFKMSDINSLFDCFDETPITEAAIQLPNVKNVEKPKLEELTAAGNKRAHDDIQY 248
EN+ + +++ S+ D + I P V+ K E+ T +K+ +
Sbjct: 210 ENITALQKNVANFTSIKDSGGRDNLYIQTISKPRRSYVQNNKSEQ-TIKPSKQNKQKEEK 268
Query: 249 ADTSVSKKPREEEEDSELITDINVDLL 329
S KP +EDSEL D+ + +L
Sbjct: 269 KTISQGNKPNSRDEDSELSIDVPLSML 295
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 29.1 bits (62), Expect = 0.74
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 183 EKPKLEELTAAGNKRAHDDIQYADTSVSKKPREEEEDSELITDINVDLLQS 335
E K+ L + H D+ + + + K R EEE S L+ +I++D ++S
Sbjct: 287 ETLKILSLVETRYEFEHRDLHWGNILIRKADRSEEEVSFLLNEISLDDIES 337
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 28.7 bits (61), Expect = 0.98
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = +3
Query: 507 QSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIK-ALSNQ--KYREFSEEFHDVGL 677
Q+++VS + AGKTV A+Y I L + Q V + +K ++ NQ E F +
Sbjct: 153 QTIIVSGESGAGKTVAAKY-IMRYLTSVQGVDHNGVVKRSVENQVLATNPIMEAFGNAKT 211
Query: 678 ITGDVTINPSASCLIMTTEILRNMLYRGSEI 770
I D N S +T N+L G+ +
Sbjct: 212 IRND---NSSRFGKYVTISFDENLLITGANV 239
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -1
Query: 579 VIELWHTRQPLFCQQTCELTQVQIVNYLYTILLLFETDP 463
+ E+ RQP++CQ C L ++ +L++ +L ++ +P
Sbjct: 172 IFEVDGQRQPIYCQNLCLLAKM----FLHSKMLYYDVEP 206
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +3
Query: 444 KQYSFILDPFQKEAIL-----CIDNLQSVLVSAHTSAGKTVVAEY 563
+Q +I+ PF ++ +L C + +L+ TS+GKT + EY
Sbjct: 869 EQEHYIITPFVQKNLLNIARACSTRMFPILIQGPTSSGKTSMIEY 913
>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 339
Score = 27.1 bits (57), Expect = 3.0
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Frame = +3
Query: 159 QLPNV--KNVE-KPKLEELTA--AGNKRAHDDIQYADTSVSKKPREEEEDSELITDINVD 323
+LP V K E + +L LT+ NKR ++D + D + +K E++ D NV+
Sbjct: 4 ELPEVIFKGTEFEEQLSNLTSDSQANKRVYEDYDFKDETSAKPIPTEKKLKVFKKDDNVE 63
Query: 324 LLQSRIVIHTLETHEGCTHEVAIPPNQEYAPLL 422
L S + I ++ + + IP Q+ +L
Sbjct: 64 TLLSALEIQNEKSKQQVEYSF-IPLKQDDGDIL 95
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 63 NIENLQSYLFKMSDINSLF--DCFDETPITEAAIQLPNVKNVEKPKLE-ELTAAGNKR 227
N++ L S + +IN L + ++ PIT+ A + N+KN++ LE + NKR
Sbjct: 285 NLDALNSCTMENHEINELTATNKMNDGPITKCARETINIKNLKTSNLERNQNSPKNKR 342
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 393 PPNQEYAPLLPLTTEPVKQYSF 458
PP +EY+P + L T PV + S+
Sbjct: 217 PPIEEYSPSVSLPTSPVAEESY 238
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/68 (22%), Positives = 29/68 (42%)
Frame = +3
Query: 267 KKPREEEEDSELITDINVDLLQSRIVIHTLETHEGCTHEVAIPPNQEYAPLLPLTTEPVK 446
KKPR+ + + I + + H ++ + GC+ E P++E LT++
Sbjct: 265 KKPRKVFDAVVIPVTIKPSIYTEPSLPHHIDWNNGCSEEFDFEPSREDEDFPDLTSDSTG 324
Query: 447 QYSFILDP 470
Q +P
Sbjct: 325 QDPLSSEP 332
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +3
Query: 177 NVEKPKLEELTAAGNKRAHDDIQYADTSVSKKPREEEEDSELITDINVDLLQSRIVI 347
N ++ +L++L A ++ + + + S EE+ D EL+T VD R+++
Sbjct: 72 NKKREELQKLEAKYGEQMANGVDGEGSDESSSEEEEDSDGELVTP-EVDAAILRMIV 127
>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 254
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 225 AYFQQQSTLPILVFQHF*HLAAESQLQLLVF 133
+++Q PI V+Q F HL E +L+ +VF
Sbjct: 110 SHYQTNVLGPIHVYQAFYHLLKEGKLKNIVF 140
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 345 IHTLETHEGCTHEVAIPPNQEYAPLLPLTT 434
+HTLE HE +++ P++E P+L T+
Sbjct: 318 LHTLEGHEDIVTKISFSPHEE--PILASTS 345
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 25.4 bits (53), Expect = 9.1
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +3
Query: 459 ILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQK 638
I+DP + + L + Q V+ G +V AIA Q IYT ++ +
Sbjct: 781 IMDPIRPDVPLAVKVCQGAGVTVRMVTGDNIVTAKAIA-----SQCGIYTEDGISMEGPE 835
Query: 639 YREFSEE 659
+R S+E
Sbjct: 836 FRSLSDE 842
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,201
Number of Sequences: 5004
Number of extensions: 64262
Number of successful extensions: 225
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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