Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_H24
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,378... 173 1e-43
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 146 1e-35
12_01_1023 + 10458092-10458397,10459126-10459254,10459335-104595... 121 7e-28
02_05_0685 + 30891289-30891810,30892740-30892915,30893379-308934... 113 2e-25
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41... 53 3e-07
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 50 3e-06
09_01_0155 - 2301903-2302151,2302334-2302491,2302651-2302819,230... 38 0.012
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 36 0.047
08_02_1517 + 27642361-27643218 33 0.25
09_02_0212 + 5820866-5821031,5821172-5821224,5821512-5821639,582... 31 1.0
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 29 5.4
11_01_0805 - 7166265-7166759 28 9.5
>11_01_0490 -
3782195-3782305,3782929-3783021,3783199-3783294,
3783373-3783521,3783886-3784039,3784110-3784205,
3784290-3784379,3784856-3785014,3785150-3785371,
3785552-3785668,3785753-3785824,3786768-3786836,
3786947-3787051,3787248-3787562,3787814-3788809
Length = 947
Score = 173 bits (422), Expect = 1e-43
Identities = 87/143 (60%), Positives = 110/143 (76%), Gaps = 9/143 (6%)
Frame = +3
Query: 372 CTHEVAIPPN----QEYAPLLPLTT-----EPVKQYSFILDPFQKEAILCIDNLQSVLVS 524
C HEVA+P ++ A L++ E K Y F LDPFQ +I C++ +SVLVS
Sbjct: 45 CIHEVAVPKGYAAAKDEAVHGTLSSPAFHGEMAKAYPFQLDPFQSVSIACLERNESVLVS 104
Query: 525 AHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVTINP 704
AHTSAGKT +AEYAIA+S ++KQRVIYT+P+KALSNQKYRE S+EF DVGL+TGDVT+ P
Sbjct: 105 AHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQP 164
Query: 705 SASCLIMTTEILRNMLYRGSEIM 773
+A+CL+MTTEILR MLYRGSE++
Sbjct: 165 NATCLVMTTEILRAMLYRGSEVI 187
>02_01_0451 -
3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 146 bits (355), Expect = 1e-35
Identities = 71/109 (65%), Positives = 88/109 (80%)
Frame = +3
Query: 447 QYSFILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKAL 626
+Y F LD FQKEAI + +SV V+AHTSAGKTVVAEYA AL+ K+ R +YT PIK +
Sbjct: 383 EYPFELDKFQKEAIYYLQKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTI 442
Query: 627 SNQKYREFSEEFHDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEIM 773
SNQKYR+F +F DVGL+TGDV+I P A+CLIMTTEILR+MLYRG++I+
Sbjct: 443 SNQKYRDFCGKF-DVGLLTGDVSIRPEATCLIMTTEILRSMLYRGADII 490
>12_01_1023 +
10458092-10458397,10459126-10459254,10459335-10459553,
10459649-10459987,10460095-10460199,10460697-10460807,
10461438-10461688,10462023-10462146,10462440-10462716,
10463212-10463357,10463449-10463598,10463678-10463910,
10464246-10464375,10464406-10464510,10464636-10464914
Length = 967
Score = 121 bits (291), Expect = 7e-28
Identities = 73/145 (50%), Positives = 87/145 (60%), Gaps = 11/145 (7%)
Frame = +3
Query: 372 CTHEVAIPPNQEYAPLLPLT-----------TEPVKQYSFILDPFQKEAILCIDNLQSVL 518
C H+V+ P + Y P P T P K + F LDPFQ EAI C+DN +SV+
Sbjct: 45 CVHDVSYP--EGYDPSAPATHLLNGVGGAEGAGPAKTFPFQLDPFQAEAIRCLDNGESVM 102
Query: 519 VSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVTI 698
QRVIYT+PIKALSNQKYREF EEF DVGL+TGDVTI
Sbjct: 103 ------------------------QRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTI 138
Query: 699 NPSASCLIMTTEILRNMLYRGSEIM 773
P+ASCL+MTTEI R+M Y+GSE+M
Sbjct: 139 EPNASCLVMTTEIWRSMQYKGSEVM 163
>02_05_0685 +
30891289-30891810,30892740-30892915,30893379-30893492,
30893846-30893954,30894038-30894124,30895137-30895736,
30895823-30896101,30896808-30896897,30897151-30897507,
30897924-30898160,30898733-30898953,30899856-30899955,
30900042-30900188,30900287-30900385
Length = 1045
Score = 113 bits (271), Expect = 2e-25
Identities = 58/105 (55%), Positives = 74/105 (70%), Gaps = 2/105 (1%)
Frame = +3
Query: 450 YSFILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALS 629
Y F +D FQ+ AI SV+VSA TS+GKT++AE A ++ +R+ YTTP+KALS
Sbjct: 166 YDFPIDKFQRLAIQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRLFYTTPLKALS 225
Query: 630 NQKYREFSEEF--HDVGLITGDVTINPSASCLIMTTEILRNMLYR 758
NQK+R+F F H+VGL+TGD IN A LIMTTEILRNMLY+
Sbjct: 226 NQKFRDFRNTFGDHNVGLLTGDSAINKDAQILIMTTEILRNMLYQ 270
>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
Length = 2177
Score = 52.8 bits (121), Expect = 3e-07
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 7/73 (9%)
Frame = +3
Query: 465 DPFQKEAILCIDNLQ-SVLVSAHTSAGKTVVAEYAI------ALSLKNKQRVIYTTPIKA 623
+P Q + + N SVLV+A T +GKT+ AE+AI A+S ++ RV+Y PI+A
Sbjct: 1363 NPIQTQVFTVLYNTDDSVLVAAPTGSGKTICAEFAILRNHQKAVSGESNMRVVYIAPIEA 1422
Query: 624 LSNQKYREFSEEF 662
L+ ++YR++ ++F
Sbjct: 1423 LAKERYRDWEQKF 1435
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 49.6 bits (113), Expect = 3e-06
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Frame = +3
Query: 465 DPFQKEAILCIDNLQ-SVLVSAHTSAGKTVVAEYAI------ALSLKNKQRVIYTTPIKA 623
+P Q + N SVLV+A T +GKT+ AE+AI A+S + RV+Y PI+A
Sbjct: 1332 NPIQTQVFTASYNSDDSVLVAAPTGSGKTICAEFAILRNHQKAVSGDSNMRVVYVAPIEA 1391
Query: 624 LSNQKYREFSEEFHDVGLI 680
L+ ++Y+++ +F ++ +
Sbjct: 1392 LAKERYKDWESKFGELARV 1410
>09_01_0155 -
2301903-2302151,2302334-2302491,2302651-2302819,
2303796-2304839,2305792-2306075,2306318-2307333,
2307937-2308085
Length = 1022
Score = 37.5 bits (83), Expect = 0.012
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +3
Query: 435 EPVKQYSFILDPFQKEAI-LCIDNLQSVLV-SAHTSAGKTVVAEYAIALSLKNKQRVIYT 608
E +K+ + D Q +AI L ++N + VL+ GKT + Y IA +++ +RV+ T
Sbjct: 537 ELLKKNKYDFDASQLKAITLGLNNKRPVLIIQGPPGTGKTGLLSYLIACAVRKGERVLVT 596
Query: 609 TPIKALSNQKYREFSEEFHDVGLITGDVTINPSAS 713
P A + + S+ D + I+PS +
Sbjct: 597 APSNAAVDNMVEKLSDTGLDTVRVGNPARISPSVA 631
>03_02_0143 -
5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 35.5 bits (78), Expect = 0.047
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Frame = +3
Query: 507 QSVLVSAHTSAGKTVVAEYAIALSLK----------NKQRVIYTTPIKALSNQKYREFSE 656
+++LV A T AGKT +A A+ +K N+ +++Y P+KAL+ + FS
Sbjct: 451 ENILVCAPTGAGKTNIAMIAVLHEVKQHFRDGILHKNEFKIVYVAPMKALAAEVTSTFSR 510
Query: 657 EFHDVGLITGDVT 695
+ L+ ++T
Sbjct: 511 RLSPLNLVVRELT 523
>08_02_1517 + 27642361-27643218
Length = 285
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +1
Query: 160 SCQMLKMLKNQNWKS*LLLEISVHMMTSSTLIPLYQK-SLAKK 285
SC+++K+L + +LEIS H+++ T++P Y K SL K
Sbjct: 195 SCRVVKLLAEARETAFSMLEISSHLLSKQTVMPSYSKWSLVSK 237
>09_02_0212 +
5820866-5821031,5821172-5821224,5821512-5821639,
5821728-5821833,5821998-5822132,5822211-5822262,
5822383-5822447,5823984-5824090,5824596-5824792,
5825145-5825260,5825368-5825453,5825525-5825597,
5826886-5826977,5827069-5827207,5827275-5827369,
5827804-5827978,5828345-5828491
Length = 643
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 243 QYADTSVSKKPREEEEDSELITDINVDLLQSRIVIHTLETH-EGCTHEVAIPPNQEYAPL 419
+ AD S K+PR ++ED EL+ +N + + L H E +E+A+ EYA
Sbjct: 552 EIADESPPKRPRYDKEDEELLEKVNSEEVTEMTFRDCLTQHVEQVDYEMAL----EYAMQ 607
Query: 420 LPLTTEP 440
++ EP
Sbjct: 608 SGVSEEP 614
>01_01_1165 -
9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 438 PVKQYSFILDPFQKEAILCIDNL-QSVLVSAHTSAGKTVV 554
P + Y I DP + +LC L +SVL +A +AGKTV+
Sbjct: 12 PAQDYPTI-DPTSFDVVLCGTGLPESVLAAACAAAGKTVL 50
>11_01_0805 - 7166265-7166759
Length = 164
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +3
Query: 330 QSRIVIHTLETHEGCTHEVAIPP-NQEYAPLLPLTTEPVKQYSFILDPFQKEAILCIDNL 506
+ R+ +H + H +P E+ LL P S L P+ A C+ N+
Sbjct: 46 RGRLGVHNPPAFKPTPHRPKLPTIRPEHPRLLAGFASPPSPPS--LSPWCSGAGQCVQNM 103
Query: 507 QSVLVSAHTSAGKTVVAEYAI 569
Q L + TSA T+ E +
Sbjct: 104 QDELPPSPTSASSTLAEEVVV 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,262,117
Number of Sequences: 37544
Number of extensions: 350058
Number of successful extensions: 969
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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