Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H23
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    30   0.35 
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    27   2.5  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    27   2.5  
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr...    27   2.5  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    27   3.3  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.6  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   7.6  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    26   7.6  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 794 WNDLQDRECTLFRNDVP-GNKLLNYQYKYRRTGQLIRQGLG 675
           WN L DRE   F N++   N + N+  ++  T  ++ Q LG
Sbjct: 261 WNQLPDREKETFLNNLSNANGIFNFDERFTNTKSIMSQVLG 301


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 596 LCKTSKFSFQCHSMAEKAEEFIE 664
           LC T + + QCHS+A K   F +
Sbjct: 336 LCPTRELAMQCHSVATKIASFTD 358


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 551 SYKRSEIRLVDIQEGLCKTSKFSFQCHSMAEKAEEFIEEWWAQDPDESTDLY 706
           S K  E  +V + +   K +      H M +K E   ++ WA  PD  ++ Y
Sbjct: 454 SMKAFEADMVLMFKNCYKFNSAGTPVHLMGKKLESIFQKLWANKPDFDSETY 505


>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -1

Query: 131 FQGKI*LNPNGIS--SIV*DYYINYLIP 54
           F GK  L+PN ++  S + +YYIN ++P
Sbjct: 96  FSGKFPLHPNNVNVNSEILEYYINEIVP 123


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 524 AWEEEKLKKSYKRSEIRLVDIQEGLCKTSKFSFQCHSM-AEKAEEFIEE 667
           A EEEK KK Y++   +L+D +    +     FQ H M +E  EE +EE
Sbjct: 255 AQEEEKQKKKYEQHIKKLLDGESN--EEGGGEFQDHGMRSEINEEVLEE 301


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/48 (20%), Positives = 24/48 (50%)
 Frame = +2

Query: 476 EGLERTSRGKYEGGDAAWEEEKLKKSYKRSEIRLVDIQEGLCKTSKFS 619
           E     +RG+YE       ++ L++ Y     + +D++    ++S++S
Sbjct: 130 ESASYRTRGEYESSSPRVPQKSLRRYYSTRTAQRLDVRRPASRSSRYS 177


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 437 DCQACRVFIESFKEGLERTSRGKYEGGDAAWEEEKLKKSYKRSEIRLVDIQEGLCK 604
           D  A +++I S  + +ER     YE  D   E  K+K +    E RL  ++E L K
Sbjct: 702 DDTAFKLWITSRLDSVERDRDFVYENSDPNLEHGKIKIATDYMERRLKKLKERLRK 757


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 206 LPYPDCIDLGLCSKHKILMN 147
           L YPDC D+  C K  +L N
Sbjct: 118 LTYPDCKDVIACCKQLVLKN 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,229,084
Number of Sequences: 5004
Number of extensions: 64611
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)