Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H23
         (833 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0124 + 901034-901153,901455-901481,901713-901792,903739-90...    30   2.6  
07_03_1697 - 28795521-28797328,28797430-28797550                       29   4.6  
07_03_0063 - 12987201-12987215,12987655-12987769,12988771-12989006     28   8.0  

>02_01_0124 +
           901034-901153,901455-901481,901713-901792,903739-903811,
           904015-904072,904561-904615,905140-905164,905361-905421,
           907416-907531,907661-907812,907918-908003,908182-908309,
           908451-908501,908774-908860,908964-909033,909351-909407,
           909729-909865,910313-910390,910971-911057
          Length = 515

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
 Frame = +2

Query: 428 TIGD-CQACRVFIESFKEGLE----RTSRGKYEGGDAAWEEEKLKKSYKRSEIRLVDIQE 592
           +IGD C AC+      + G+     R         ++  + E     Y+ SE+R+V++ +
Sbjct: 28  SIGDKCAACKAVAAELEIGISSEKPRNHLDLRNRLNSKGQREGKVIDYRVSELRVVELLD 87

Query: 593 GLC-KTSKFSFQCHSMAEKAEEFIEEW 670
           GLC K   ++ Q     EK    + +W
Sbjct: 88  GLCDKMQDYTLQKLESGEKGWVKVADW 114


>07_03_1697 - 28795521-28797328,28797430-28797550
          Length = 642

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 737 CCPEHHYGKECTPCPXDH 790
           CCP HH  + CT C   H
Sbjct: 369 CCPPHHGKQACTSCRGQH 386


>07_03_0063 - 12987201-12987215,12987655-12987769,12988771-12989006
          Length = 121

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +2

Query: 479 GLERTSRGKYEGGDAAWEEEKLKKSYKRSEIRLVDIQEG---LCKTSKFSFQCHSMAEKA 649
           G E  + G   GG+A  EEEK +K  +R E+    + EG   L   SK      S+A+  
Sbjct: 26  GKETAAAGAQLGGEAMVEEEKREKREERKEMGQWAVGEGWGFLIYKSKLMEYLRSIAQTR 85

Query: 650 EE 655
           ++
Sbjct: 86  DD 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,266,108
Number of Sequences: 37544
Number of extensions: 398428
Number of successful extensions: 822
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)