Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_H23
(833 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73896-7|CAO82025.1| 310|Caenorhabditis elegans Hypothetical pr... 107 1e-23
Z73896-6|CAA98055.1| 356|Caenorhabditis elegans Hypothetical pr... 107 1e-23
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr... 32 0.58
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr... 32 0.58
Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alph... 31 1.3
Z82084-1|CAB04978.1| 398|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z83120-1|CAB05583.1| 837|Caenorhabditis elegans Hypothetical pr... 28 7.2
U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate rece... 28 7.2
U10438-15|AAA19090.3| 908|Caenorhabditis elegans Glutamate rece... 28 7.2
AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA iono... 28 7.2
Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical p... 28 9.5
>Z73896-7|CAO82025.1| 310|Caenorhabditis elegans Hypothetical
protein F09E8.2b protein.
Length = 310
Score = 107 bits (257), Expect = 1e-23
Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 12/126 (9%)
Frame = +2
Query: 440 CQACRVFIESFKEGLERTSRGKYEGGDAAWEEEKLKKSYKRSEIRLVDIQEGLCKTS--- 610
C+ C + +F EGL++T+R + GGD AWEE+ L K YK SE RL+++ EG+CK S
Sbjct: 27 CRTCNFLVSTFDEGLKKTARHHFAGGDTAWEEKNLGK-YKTSETRLIEVLEGVCKKSSLP 85
Query: 611 ---------KFSFQCHSMAEKAEEFIEEWWAQDPDESTDLYAYICIDNLKVCCPEHHYGK 763
+ F+C + EK EE IEE++ + ++ ++C++ LK+CCP+ H+GK
Sbjct: 86 NMDNFMGIAEIEFKCSTQLEKHEETIEEFYYN--QQHNNMSNWLCVEQLKLCCPDGHFGK 143
Query: 764 ECTPCP 781
C CP
Sbjct: 144 NCEQCP 149
>Z73896-6|CAA98055.1| 356|Caenorhabditis elegans Hypothetical
protein F09E8.2a protein.
Length = 356
Score = 107 bits (257), Expect = 1e-23
Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 12/126 (9%)
Frame = +2
Query: 440 CQACRVFIESFKEGLERTSRGKYEGGDAAWEEEKLKKSYKRSEIRLVDIQEGLCKTS--- 610
C+ C + +F EGL++T+R + GGD AWEE+ L K YK SE RL+++ EG+CK S
Sbjct: 27 CRTCNFLVSTFDEGLKKTARHHFAGGDTAWEEKNLGK-YKTSETRLIEVLEGVCKKSSLP 85
Query: 611 ---------KFSFQCHSMAEKAEEFIEEWWAQDPDESTDLYAYICIDNLKVCCPEHHYGK 763
+ F+C + EK EE IEE++ + ++ ++C++ LK+CCP+ H+GK
Sbjct: 86 NMDNFMGIAEIEFKCSTQLEKHEETIEEFYYN--QQHNNMSNWLCVEQLKLCCPDGHFGK 143
Query: 764 ECTPCP 781
C CP
Sbjct: 144 NCEQCP 149
>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical
protein ZC116.3 protein.
Length = 3871
Score = 31.9 bits (69), Expect = 0.58
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 584 IQEGLCK-TSKFSFQCHSMAEKAEEFIEEWWAQDPDESTDLYAYICIDNLKVC-CPEHHY 757
+ G CK TS ++C A +F E+ + + I ++N C CPEH +
Sbjct: 353 VNAGKCKPTSDTEYKCECEAGFLGKFCEKTSPCQTNPCKNGGTCIAVENSAYCDCPEHFF 412
Query: 758 GKEC 769
G+ C
Sbjct: 413 GRAC 416
>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical
protein ZC116.3 protein.
Length = 3871
Score = 31.9 bits (69), Expect = 0.58
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 584 IQEGLCK-TSKFSFQCHSMAEKAEEFIEEWWAQDPDESTDLYAYICIDNLKVC-CPEHHY 757
+ G CK TS ++C A +F E+ + + I ++N C CPEH +
Sbjct: 353 VNAGKCKPTSDTEYKCECEAGFLGKFCEKTSPCQTNPCKNGGTCIAVENSAYCDCPEHFF 412
Query: 758 GKEC 769
G+ C
Sbjct: 413 GRAC 416
>Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical
protein T19B10.7 protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -3
Query: 264 ETRFIHKISSIYKHFFNAIASIPRLY*SWIMLKAQNFDELNFTRFSRQD 118
+ + +HK+S +Y + I+ RL S +LK DE+ + R+S D
Sbjct: 105 KVQILHKLSDVYCN--RVISQTTRLLISRTLLKISGIDEVKYERYSSDD 151
>AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alpha 1
protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -3
Query: 264 ETRFIHKISSIYKHFFNAIASIPRLY*SWIMLKAQNFDELNFTRFSRQD 118
+ + +HK+S +Y + I+ RL S +LK DE+ + R+S D
Sbjct: 105 KVQILHKLSDVYCN--RVISQTTRLLISRTLLKISGIDEVKYERYSSDD 151
>Z82084-1|CAB04978.1| 398|Caenorhabditis elegans Hypothetical
protein ZK1053.1 protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +2
Query: 536 EKLKKSYKRSEIRLVDIQ---EGLCKTSKFSFQCHSMAEKAEEFIEEWW 673
EKL K+ K E R+ + E + S ++F+ MAE +EF WW
Sbjct: 181 EKLPKNDKYFEFRVFNTSLYPEFVSNWSTYNFKAIVMAEMLQEFPAVWW 229
>Z83120-1|CAB05583.1| 837|Caenorhabditis elegans Hypothetical
protein R06A4.2 protein.
Length = 837
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 536 EKLKKSYKRSEIRLVDIQEGLCKTSKFSFQCHSMAEKAEEFIEEWWAQDPDESTD 700
EK KKS + EI +D+ +G + + AE+A E E +D DE D
Sbjct: 490 EKDKKSEEAREIEAIDVDDGDADVKQEVVEKDGKAEEAPEH-EAMDVEDDDEDLD 543
>U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 2, isoform b protein.
Length = 977
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Frame = +2
Query: 425 RTIGDCQACRVFIESFKEGLE--RTSRGKY 508
++I + + R+F+ S+ +G+E RTS+GKY
Sbjct: 779 QSITNSTSNRIFVSSYADGIEKVRTSKGKY 808
>U10438-15|AAA19090.3| 908|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 2, isoform a protein.
Length = 908
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Frame = +2
Query: 425 RTIGDCQACRVFIESFKEGLE--RTSRGKY 508
++I + + R+F+ S+ +G+E RTS+GKY
Sbjct: 710 QSITNSTSNRIFVSSYADGIEKVRTSKGKY 739
>AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA
ionotropic glutamate receptorsubunit GLR-2 protein.
Length = 977
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Frame = +2
Query: 425 RTIGDCQACRVFIESFKEGLE--RTSRGKY 508
++I + + R+F+ S+ +G+E RTS+GKY
Sbjct: 779 QSITNSTSNRIFVSSYADGIEKVRTSKGKY 808
>Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 665 EWWAQDPDESTDLYAYICIDNL 730
+W A DP D Y Y+CI L
Sbjct: 537 DWLAVDPKSFQDAYVYLCIPKL 558
>Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 665 EWWAQDPDESTDLYAYICIDNL 730
+W A DP D Y Y+CI L
Sbjct: 537 DWLAVDPKSFQDAYVYLCIPKL 558
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,795,287
Number of Sequences: 27780
Number of extensions: 360227
Number of successful extensions: 908
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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