Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H22
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    30   0.44 
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    29   0.77 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.3  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    28   1.8  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    28   1.8  
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       27   3.1  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    27   3.1  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   5.4  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.4  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    25   9.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.5  

>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 15/65 (23%), Positives = 32/65 (49%)
 Frame = +2

Query: 290 YGIDDTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCMEETDPDRSNIISTMIFVTGL 469
           + ++   P  L + +  QH L M+G + + P I+  A     T    + ++S  +  +G+
Sbjct: 58  FSLNAKVPVLLALLLGFQHALAMVGGVTSPPRII--AASANLTTEQTNYLVSAGLISSGI 115

Query: 470 ITWLQ 484
           +T +Q
Sbjct: 116 MTLIQ 120


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 686 GIKPQLRWHRTVHTSYSSTPAAVLRYSWRPRSPHQDTSRPADS 558
           G K  L+ H  +  +  STP+++   SW  R  +  TS P  S
Sbjct: 505 GAKQSLQLHGGIVHATVSTPSSIKSLSWHRRGDYLATSSPTSS 547


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 303 SSIPYVTLPLRASSGFCSPRTSLTHTPLTASS 208
           +S+PY + P+ +S+   S  T +T TP+T ++
Sbjct: 500 TSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 303 SSIPYVTLPLRASSGFCSPRTSLTHTPLTASS 208
           +S+PY + P+ +S+   S  T +T TP+T ++
Sbjct: 559 TSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 792 WSNSXSPTSATVGAIVN-GVTNLNSDPITPKYPKNNWNKAATAMAPD 655
           W N     S+  G  +  G +++N + + P+Y  ++WN  A+ +  D
Sbjct: 620 WLNGGPGCSSLTGLFMELGPSSINIETLKPEYNPHSWNSNASVIFLD 666


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 358 DWGHCRDPVHPLPGSLHGGNRSRPIQYYIYYDICHRFNNL 477
           +WG    PV PL      GN S P+QY  Y+D+    N L
Sbjct: 17  NWG---SPVKPLNYKTAIGNSSIPLQYRNYWDVFQANNVL 53


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 636 VHTCRRSSVLMATKISSSGHFQAGRFSIAS 547
           +HT  + ++L++T  + S HF A  F + S
Sbjct: 102 IHTHSQEAILLSTLFADSDHFSATGFEVLS 131


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 644 MCELSGAIAVAALFQLFLGYFGVIGSLLRFVTPLT 748
           +C  S   +VA  F LFL Y   +G L++ + PLT
Sbjct: 147 LCSSSSPCSVAKAFTLFLEY---LGKLMQSLNPLT 178


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 460 DKYHSRYNIGSVWICFLHAESRAEDERDRDNGPNHR 353
           D+Y  R N  +  +  +  E++ EDE+D  N P++R
Sbjct: 535 DEYRRRRNRTAQRVVEIPNETQTEDEQDGTNTPDNR 570


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +2

Query: 350 LTMIGAIVAIPFILCPALCMEETDPDRSNIISTMIF--VTGLITWLQATFGCRLPIVQGG 523
           LT +G I+  P +    LC+      R +++    F  +TG++ WL +T+     IV   
Sbjct: 425 LTFLG-IILTPEVSAVTLCLFWNKMTRFSLVVGAPFGTITGVVCWLASTYSFCDGIVNKD 483

Query: 524 TI 529
           T+
Sbjct: 484 TV 485


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = +2

Query: 311 PWYLCIFMALQHYLTMIGAIVAIPFILCPALCMEETDPDRSN 436
           PW+L  F  +  Y      ++ +P +  P    ++  PD  N
Sbjct: 442 PWHLGKFSKINGYAACAFVLLMVPILCFPQFRGKDNTPDAMN 483


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 234  THTPLTASSPIWITLLCTMALTLRPSEVSL 145
            TH  + +S P W T   T+ ++  P  +SL
Sbjct: 2223 THAKILSSHPEWDTKAVTLTVSYIPGSISL 2252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,362,013
Number of Sequences: 5004
Number of extensions: 71011
Number of successful extensions: 215
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)