Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_H19
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0362 - 22366668-22367516 256 2e-68
04_04_0143 - 23091613-23092467 254 9e-68
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 239 3e-63
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 205 3e-53
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 169 3e-42
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580... 85 5e-17
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 28 8.5
>02_04_0362 - 22366668-22367516
Length = 282
Score = 256 bits (627), Expect = 2e-68
Identities = 126/241 (52%), Positives = 168/241 (69%)
Frame = +2
Query: 146 AAQLFNRIXXXXXXXXXXXXXXNSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWV 325
AA L ++ ++ALY VDGG RAVIFDRF GV EGTHF +PW+
Sbjct: 8 AASLLTKLAQAAAGLGIAASAASTALYTVDGGQRAVIFDRFRGVLPETSSEGTHFIVPWL 67
Query: 326 QRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPS 505
Q+P IFDIR+RP + + +G+KDLQ V++TLR+L RP D+LP I+T LG++YDE+VLPS
Sbjct: 68 QKPFIFDIRTRPHSFSSTSGTKDLQMVSLTLRVLARPDIDRLPDIFTSLGLEYDEKVLPS 127
Query: 506 ITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQ 685
I +EVLKAVVAQF+A +L+T+R VS V DSL RAA+F ++LDD++ITHL +G EF+Q
Sbjct: 128 IGNEVLKAVVAQFNADQLLTERPHVSALVRDSLIRRAAEFNIVLDDVAITHLAYGPEFSQ 187
Query: 686 AVELKQVAQQEAEKARXLVXKAEQQKKXXXXXXXXXXXXXXXXXKSFGSAGEGLVELRRI 865
AVE KQVAQQEAE++R LV +AEQ+++ ++ +AG GL+ELRRI
Sbjct: 188 AVEKKQVAQQEAERSRFLVARAEQERRAAIVRAEGESEAARLISEATAAAGTGLIELRRI 247
Query: 866 E 868
E
Sbjct: 248 E 248
>04_04_0143 - 23091613-23092467
Length = 284
Score = 254 bits (621), Expect = 9e-68
Identities = 122/219 (55%), Positives = 163/219 (74%)
Frame = +2
Query: 212 NSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSK 391
+++LY VDGG RAVIFDRF GV VGEGTHF +PW+Q+P +FDIR+RP N + +G+K
Sbjct: 29 SASLYTVDGGERAVIFDRFRGVLPETVGEGTHFLVPWLQKPFVFDIRTRPHNFSSNSGTK 88
Query: 392 DLQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQR 571
DLQ VN+TLR+L RP LP I+T LG++YD++VLPSI +EVLKAVVAQF+A +L+T+R
Sbjct: 89 DLQMVNLTLRLLSRPDVVHLPTIFTSLGLEYDDKVLPSIGNEVLKAVVAQFNADQLLTER 148
Query: 572 EIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARXLVXKA 751
VS V D+L RA +F +ILDD++ITHL++G EF+QAVE KQVAQQEAE+++ LV KA
Sbjct: 149 PHVSALVRDALIRRAREFNIILDDVAITHLSYGIEFSQAVEKKQVAQQEAERSKFLVAKA 208
Query: 752 EQQKKXXXXXXXXXXXXXXXXXKSFGSAGEGLVELRRIE 868
EQ+++ ++ +AG GL+ELRRIE
Sbjct: 209 EQERRAAIVRAEGESESARLISEATAAAGTGLIELRRIE 247
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 239 bits (584), Expect = 3e-63
Identities = 110/184 (59%), Positives = 146/184 (79%)
Frame = +2
Query: 215 SALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKD 394
++LYNV+GGHRA++F+R G+K V EGTHF IPW +RPII+D+R+RP V + +GS+D
Sbjct: 29 NSLYNVEGGHRAIVFNRLEGIKDKVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRD 88
Query: 395 LQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQRE 574
LQ V I LR+L RP+P++LP IY LG +++ERVLPSI E LKAVVAQ++A +LITQRE
Sbjct: 89 LQMVRIGLRVLTRPLPEKLPTIYRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQRE 148
Query: 575 IVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARXLVXKAE 754
VS+++ LTERA+ F + LDD+SIT L+FGKEFT A+E KQVA QEAE+A+ +V KAE
Sbjct: 149 AVSREIRKILTERASNFNIALDDVSITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKAE 208
Query: 755 QQKK 766
Q K+
Sbjct: 209 QDKR 212
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 205 bits (501), Expect = 3e-53
Identities = 98/166 (59%), Positives = 127/166 (76%)
Frame = +2
Query: 269 AGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFRPVPDQ 448
+G V EGTHF IPW +RPII+D+R+RP V + +GS+DLQ V I LR+L RP+P++
Sbjct: 125 SGTIYQVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPMPEK 184
Query: 449 LPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFG 628
LP IY LG +++ERVLPSI E LKAVVAQ++A +LITQRE VS+++ LTERA F
Sbjct: 185 LPTIYRTLGENFNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERARNFN 244
Query: 629 LILDDISITHLTFGKEFTQAVELKQVAQQEAEKARXLVXKAEQQKK 766
+ LDD+SIT L+FGKEFT A+E KQVA QEAE+A+ +V KAEQ K+
Sbjct: 245 IALDDVSITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKAEQDKR 290
Score = 38.3 bits (85), Expect = 0.008
Identities = 13/22 (59%), Positives = 20/22 (90%)
Frame = +2
Query: 215 SALYNVDGGHRAVIFDRFAGVK 280
++LYNV+GGHRA++F+R G+K
Sbjct: 35 NSLYNVEGGHRAIVFNRIQGIK 56
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 169 bits (410), Expect = 3e-42
Identities = 83/148 (56%), Positives = 110/148 (74%)
Frame = +2
Query: 281 QLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFRPVPDQLPRI 460
Q V EGT F I +RPII+D+R+RP V + +GS+DLQ V I LR+L RP+P++LP I
Sbjct: 216 QEVYPEGTQFMILLFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPLPEKLPTI 275
Query: 461 YTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILD 640
Y LG +++ERVLPSI E LKAVVAQ++A +LITQRE VS+++ LTERA+ F + LD
Sbjct: 276 YRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFNIALD 335
Query: 641 DISITHLTFGKEFTQAVELKQVAQQEAE 724
D+SIT L+FGKEFT A+E KQ + A+
Sbjct: 336 DVSITSLSFGKEFTHAIEAKQGEAKSAQ 363
>03_06_0427 -
33857008-33857137,33857224-33857258,33857966-33858046,
33858213-33858338,33858410-33858568,33858797-33858934,
33859084-33859155,33859359-33860273
Length = 551
Score = 85.4 bits (202), Expect = 5e-17
Identities = 48/110 (43%), Positives = 68/110 (61%)
Frame = +2
Query: 245 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKDLQNVNITLRI 424
R + ++ + QL+ E +HF IPW +R IFD+ RP V + +GS+DLQ V L +
Sbjct: 323 REICNNKAVRLLQLLNPEKSHFSIPWFERLTIFDVCPRPNLVESTSGSRDLQMVRPGLGV 382
Query: 425 LFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQRE 574
L RP+P + Y LG ++ ERVL S+ E LKAVVAQ++A +LI RE
Sbjct: 383 LTRPLPTK----YRSLGDNFCERVLTSLMHETLKAVVAQYNASQLIIPRE 428
Score = 48.4 bits (110), Expect = 7e-06
Identities = 24/64 (37%), Positives = 41/64 (64%)
Frame = +2
Query: 575 IVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARXLVXKAE 754
+++ ++++L AQ+ + I +F KEFT A+E KQV +QEA++A+ +V KAE
Sbjct: 402 VLTSLMHETLKAVVAQYNA--SQLIIPRESFRKEFTHAIETKQVDEQEAQRAKFIVEKAE 459
Query: 755 QQKK 766
Q K+
Sbjct: 460 QHKR 463
>11_04_0236 +
15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 28.3 bits (60), Expect = 8.5
Identities = 29/96 (30%), Positives = 45/96 (46%)
Frame = -2
Query: 532 NCFQNF*GNRWKYSFIIINTKNSVNSW*LIRNWSEEDTKCDVNILKIFTSSNSRNISGSR 353
N Q F N+ +Y FI+I+ +NSW IR+ + D C K+ T+S N++
Sbjct: 261 NELQEFLQNK-RY-FIVIDGLWDINSWNKIRS-ALPDDNCG---SKVVTTSGISNVARDV 314
Query: 352 PDVKYNWPLDPRNEEMCAFTNN*LLNTSKSIEDNSS 245
DV PL N + T ++ SK +E S+
Sbjct: 315 GDVYNLQPLSHGNSKKLLSTRL-YVDESKCLESTSA 349
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,962,724
Number of Sequences: 37544
Number of extensions: 323370
Number of successful extensions: 796
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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