Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_H19
(875 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-9|AAK27865.1| 275|Caenorhabditis elegans Mitochondrial... 318 3e-87
U28940-7|AAA68353.2| 294|Caenorhabditis elegans Mitochondrial p... 203 1e-52
U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 43 3e-04
U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 43 3e-04
AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin prot... 38 0.007
AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin prot... 38 0.007
Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical pr... 36 0.050
AC006638-5|AAP82655.1| 175|Caenorhabditis elegans Stomatin prot... 31 1.1
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type chlo... 30 2.5
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo... 30 2.5
AF039052-11|AAF98632.1| 583|Caenorhabditis elegans Hypothetical... 29 4.4
Z67879-2|CAA91788.2| 156|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical pr... 28 7.6
AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical ... 28 7.6
>AC087079-9|AAK27865.1| 275|Caenorhabditis elegans Mitochondrial
prohibitin complexprotein 1 protein.
Length = 275
Score = 318 bits (781), Expect = 3e-87
Identities = 161/241 (66%), Positives = 183/241 (75%)
Frame = +2
Query: 146 AAQLFNRIXXXXXXXXXXXXXXNSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWV 325
A +L R+ +ALYNVDGG RAVIFDRF+GVK VVGEGTHF IPWV
Sbjct: 5 AQKLLGRLGTVGVGLSIAGGIAQTALYNVDGGQRAVIFDRFSGVKNEVVGEGTHFLIPWV 64
Query: 326 QRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPS 505
Q+PIIFDIRS PR V TITGSKDLQNVNITLRIL RP PD+LP IY +G+DY ERVLPS
Sbjct: 65 QKPIIFDIRSTPRAVTTITGSKDLQNVNITLRILHRPSPDRLPNIYLNIGLDYAERVLPS 124
Query: 506 ITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQ 685
IT+EVLKAVVAQFDA E+ITQRE+VSQ+ + +L ERAAQFGL+LDDI+ITHL FG+EFT+
Sbjct: 125 ITNEVLKAVVAQFDAHEMITQREVVSQRASVALRERAAQFGLLLDDIAITHLNFGREFTE 184
Query: 686 AVELKQVAQQEAEKARXLVXKAEQQKKXXXXXXXXXXXXXXXXXKSFGSAGEGLVELRRI 865
AVE+KQVAQQEAEKAR LV KAEQ K K+F SAG+GLVELR+I
Sbjct: 185 AVEMKQVAQQEAEKARYLVEKAEQMKIAAVTTAEGDAQAAKLLAKAFASAGDGLVELRKI 244
Query: 866 E 868
E
Sbjct: 245 E 245
>U28940-7|AAA68353.2| 294|Caenorhabditis elegans Mitochondrial
prohibitin complexprotein 2 protein.
Length = 294
Score = 203 bits (496), Expect = 1e-52
Identities = 98/183 (53%), Positives = 133/183 (72%)
Frame = +2
Query: 218 ALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKDL 397
+++ V+ GHRA++F+R G+ + EG HF IPW Q PII+DIR+RP + + TGSKDL
Sbjct: 39 SMFTVEAGHRAIMFNRIGGLSTDLYKEGLHFRIPWFQYPIIYDIRARPNQIRSPTGSKDL 98
Query: 398 QNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREI 577
Q VNI LR+L RP P+ L IY LG +++ERVLPSI +EVLK VVA+F+A +LITQR+
Sbjct: 99 QMVNIGLRVLSRPNPEHLVHIYRTLGQNWEERVLPSICNEVLKGVVAKFNASQLITQRQQ 158
Query: 578 VSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARXLVXKAEQ 757
VS V +L ERA F +ILDD+S+T L F +++ AVE KQVA QEA++A V +A+Q
Sbjct: 159 VSMLVRKTLIERALDFNIILDDVSLTELAFSPQYSAAVEAKQVAAQEAQRATFYVERAKQ 218
Query: 758 QKK 766
QK+
Sbjct: 219 QKQ 221
>U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein
1, isoform a protein.
Length = 330
Score = 42.7 bits (96), Expect = 3e-04
Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 1/160 (0%)
Frame = +2
Query: 245 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPT-ITGSKDLQNVNITLR 421
RAV+F R + V G G F IP + + D+R NVP+ S+D V++
Sbjct: 72 RAVVF-RLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASYNVPSQEILSRDSVTVSVDAV 130
Query: 422 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 601
+ F+ V D I +++G+ + L+ ++ E+++ RE +S + S
Sbjct: 131 VYFK-VFDP---ITSVVGVGNATDSTKLLAQTTLRTILGTHTLSEILSDREKISADMKIS 186
Query: 602 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEA 721
L E +G+ ++ + + + + +A+ + A ++A
Sbjct: 187 LDEATEPWGIKVERVELRDVRLPSQMQRAMAAEAEATRDA 226
>U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein
1, isoform b protein.
Length = 325
Score = 42.7 bits (96), Expect = 3e-04
Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 1/160 (0%)
Frame = +2
Query: 245 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPT-ITGSKDLQNVNITLR 421
RAV+F R + V G G F IP + + D+R NVP+ S+D V++
Sbjct: 72 RAVVF-RLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASYNVPSQEILSRDSVTVSVDAV 130
Query: 422 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 601
+ F+ V D I +++G+ + L+ ++ E+++ RE +S + S
Sbjct: 131 VYFK-VFDP---ITSVVGVGNATDSTKLLAQTTLRTILGTHTLSEILSDREKISADMKIS 186
Query: 602 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEA 721
L E +G+ ++ + + + + +A+ + A ++A
Sbjct: 187 LDEATEPWGIKVERVELRDVRLPSQMQRAMAAEAEATRDA 226
>AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin protein
5, isoform b protein.
Length = 312
Score = 38.3 bits (85), Expect = 0.007
Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 1/163 (0%)
Frame = +2
Query: 245 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 421
RAVIF +K G G F +P + I D+R +V P S+D V++
Sbjct: 142 RAVIFRLGRLIKGGTKGPGLFFVLPCIDTMKIVDLRVLSFDVPPQEILSRDSVTVSVEAV 201
Query: 422 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 601
I FR V + + + + + R+L T L+ V+ E++++R+ ++
Sbjct: 202 IYFR-VSNPVISVTNVNDAQFSTRLLAQTT---LRNVLGTKTLSEMLSERDAIASISEKV 257
Query: 602 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKA 730
L E +G+ ++ + I + + +++ K A + A A
Sbjct: 258 LDEGTDPWGVKVERVEIKDIRLPHQLMRSMAAKAEAVRRARAA 300
>AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin protein
5, isoform a protein.
Length = 367
Score = 38.3 bits (85), Expect = 0.007
Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 1/163 (0%)
Frame = +2
Query: 245 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 421
RAVIF +K G G F +P + I D+R +V P S+D V++
Sbjct: 142 RAVIFRLGRLIKGGTKGPGLFFVLPCIDTMKIVDLRVLSFDVPPQEILSRDSVTVSVEAV 201
Query: 422 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 601
I FR V + + + + + R+L T L+ V+ E++++R+ ++
Sbjct: 202 IYFR-VSNPVISVTNVNDAQFSTRLLAQTT---LRNVLGTKTLSEMLSERDAIASISEKV 257
Query: 602 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKA 730
L E +G+ ++ + I + + +++ K A + A A
Sbjct: 258 LDEGTDPWGVKVERVEIKDIRLPHQLMRSMAAKAEAVRRARAA 300
>Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical
protein F30A10.5 protein.
Length = 327
Score = 35.5 bits (78), Expect = 0.050
Identities = 24/150 (16%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Frame = +2
Query: 287 VVGEGTHFFIPWVQR-PIIFDIRSRPRNVPTITGSKDLQNVNITLR-ILFRPVPDQLPRI 460
++ G +F +P + + + ++R +P G+ + NV + L +L+ V D
Sbjct: 58 ILEPGLNFLLPIIDKIKFVQNLREIAIEIPE-QGAITIDNVQLRLDGVLYLRVFDPYKAC 116
Query: 461 YTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILD 640
G+D E + + +++ V + + + +RE++++ + ++ + +A +G+
Sbjct: 117 DASYGVDDPEFAVTQLAQTTMRSEVGKINLDTVFKERELLNENIVFAINKASAPWGIQCM 176
Query: 641 DISITHLTFGKEFTQAVELKQVAQQEAEKA 730
I + + +A++++ A+++ A
Sbjct: 177 RYEIRDMQMPSKIQEAMQMQVEAERKKRAA 206
>AC006638-5|AAP82655.1| 175|Caenorhabditis elegans Stomatin protein
5, isoform c protein.
Length = 175
Score = 31.1 bits (67), Expect = 1.1
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Frame = +2
Query: 245 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 421
RAVIF +K G G F +P + I D+R +V P S+D V++
Sbjct: 58 RAVIFRLGRLIKGGTKGPGLFFVLPCIDTMKIVDLRVLSFDVPPQEILSRDSVTVSVEAV 117
Query: 422 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVS 583
I FR V + + + + + R+L T L+ V+ E++++R+ ++
Sbjct: 118 IYFR-VSNPVISVTNVNDAQFSTRLLAQTT---LRNVLGTKTLSEMLSERDAIA 167
>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform a protein.
Length = 1001
Score = 29.9 bits (64), Expect = 2.5
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = +2
Query: 419 RILFRPVPDQLPRIY---TILGIDYDERVLPSITSEVLKAVVAQFDAGELIT-QREIVSQ 586
R L PV P++ T+ G+ +E +T E +A+ FDA L T +RE+ +
Sbjct: 668 RFLIVPVAKNGPQVAKNETLTGLS-EENARKILTVEEKQAL---FDAASLATPKREMSGK 723
Query: 587 KVNDSLTERAAQFGLILDDISITHLTFGKE 676
+N E G I SITHL+FG++
Sbjct: 724 TINPVHIESHHTIGDIFR--SITHLSFGRQ 751
>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
chloride channel CLH-3b protein.
Length = 1001
Score = 29.9 bits (64), Expect = 2.5
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = +2
Query: 419 RILFRPVPDQLPRIY---TILGIDYDERVLPSITSEVLKAVVAQFDAGELIT-QREIVSQ 586
R L PV P++ T+ G+ +E +T E +A+ FDA L T +RE+ +
Sbjct: 668 RFLIVPVAKNGPQVAKNETLTGLS-EENARKILTVEEKQAL---FDAASLATPKREMSGK 723
Query: 587 KVNDSLTERAAQFGLILDDISITHLTFGKE 676
+N E G I SITHL+FG++
Sbjct: 724 TINPVHIESHHTIGDIFR--SITHLSFGRQ 751
>AF039052-11|AAF98632.1| 583|Caenorhabditis elegans Hypothetical
protein T22D1.11 protein.
Length = 583
Score = 29.1 bits (62), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 317 PWVQRPIIFDIRSRPRNVPTITG 385
P +Q ++ D +P+N+PT+TG
Sbjct: 315 PLIQNVLVQDFYEKPKNIPTLTG 337
>Z67879-2|CAA91788.2| 156|Caenorhabditis elegans Hypothetical
protein C05E7.3 protein.
Length = 156
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 230 VDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTI 379
+ GG FDRF K+ + GE I W +R +R+ R++P I
Sbjct: 31 IGGGDDMAHFDRFITHKRAINGELRRSSILWGKRAHASGLRNFERDIPLI 80
>Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical
protein C47D12.6b protein.
Length = 684
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +2
Query: 476 IDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISIT 655
I+Y+E ++ +V KA +AQF+ +I +E + VN + A + + LD +
Sbjct: 606 IEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVNVRTRDNAVRGEVALDKLISK 665
Query: 656 HLTFGKEFTQAVE 694
F E+ E
Sbjct: 666 FRRFADEYVADTE 678
>Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical
protein C47D12.6a protein.
Length = 725
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +2
Query: 476 IDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISIT 655
I+Y+E ++ +V KA +AQF+ +I +E + VN + A + + LD +
Sbjct: 647 IEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVNVRTRDNAVRGEVALDKLISK 706
Query: 656 HLTFGKEFTQAVE 694
F E+ E
Sbjct: 707 FRRFADEYVADTE 719
>AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical
protein Y59A8A.2 protein.
Length = 613
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 524 KAVVAQFDAGELITQREIVS-QKVNDSLTERAAQFGLILDDIS 649
K +V +F A E + ++++ S +K++ LTE GL+L D +
Sbjct: 465 KHLVERFSANEELIEQKLTSIEKLHQLLTELGGDSGLLLSDFN 507
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,152,920
Number of Sequences: 27780
Number of extensions: 310790
Number of successful extensions: 792
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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