Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H18
         (772 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    25   0.51 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    25   0.67 
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    25   0.88 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   6.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   6.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.2  

>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 609 LPNPTMPTVAPASPGPVIQVGAHETQPPV-LASCIASGT 496
           +P PT+P + PA         A E+  P   +SC+ S T
Sbjct: 206 VPKPTVPKIPPAEFPTTSSSSALESPDPASRSSCLGSNT 244


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = -2

Query: 609 LPNPTMPTVAPAS-PGPVIQVGAHETQPPVLASCIASGT 496
           +P PT+P + PA  P            P   +SC+ S T
Sbjct: 206 VPKPTVPKIPPAEFPTTSSSSALESPNPASRSSCLGSNT 244


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -3

Query: 209 HIDLLEVVLHSLAYQTSSRIFDIVLLHSCSLQ*QYHH 99
           H+    V+++S+  QT   +FD +  H+      Y H
Sbjct: 124 HLAYGVVIIYSICVQTEKSVFDFLCRHTVEYFQNYIH 160


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 248 LSALEKVDSID*HHIDLLEVVLHSLAYQTSSRIFDI 141
           +S ++ V+    HH++   + +   +  +SSRI DI
Sbjct: 1   MSEMQSVEGAMVHHLEPHRMQIKPQSPSSSSRILDI 36


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 248 LSALEKVDSID*HHIDLLEVVLHSLAYQTSSRIFDI 141
           +S ++ V+    HH++   + +   +  +SSRI DI
Sbjct: 1   MSEMQSVEGAMVHHLEPHRMQIKPQSPSSSSRILDI 36


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 561 VIQVGAHETQPPV 523
           V+QVG H   PPV
Sbjct: 684 VLQVGTHADLPPV 696


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,296
Number of Sequences: 336
Number of extensions: 3988
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)