Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_H18
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 86 5e-18
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 64 2e-11
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 45 1e-05
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 43 6e-05
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 39 0.001
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.18
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 29 0.97
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 27 3.0
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 27 3.9
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 26 6.9
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 9.1
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 25 9.1
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 86.2 bits (204), Expect = 5e-18
Identities = 47/146 (32%), Positives = 74/146 (50%)
Frame = +2
Query: 311 DTELLDAAGPSLKVVATISVGHDHIDVAECKKRGVRIGYTPDVXXXXXXXXXXXXXXXXS 490
D E++D PS+K + + G++ +DVA C RG+++ + P
Sbjct: 70 DKEIIDNLPPSVKFICHLGAGYETVDVAACTARGIQVSHVPKAVDDATADVGIFLMLGAL 129
Query: 491 RRVPEAIHEAKTGGWVSWAPTWMTGPGLAGATVGIVGFGRIGQAVARRVKAFNTERIIYF 670
R + I E +W G T+GI+G G IG+ +A+R +AF+ +I+Y
Sbjct: 130 RGFNQGIFELHKN---NWNANCKPSHDPEGKTLGILGLGGIGKTMAKRARAFDM-KIVYH 185
Query: 671 NRSHRPEEKETGAVKVSFDELLTQSD 748
NR+ PEE+ GA VSFD+LL +SD
Sbjct: 186 NRTPLPEEEAEGAEFVSFDDLLAKSD 211
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 64.5 bits (150), Expect = 2e-11
Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 2/148 (1%)
Frame = +2
Query: 317 ELLDAAGPSLKVVATISVGHDHIDVAECKKRGVRIGYTPDVXXXXXXXXXXXXXXXXSRR 496
E+L P+ K+ T + G++++DV + GV + TP+ R
Sbjct: 75 EMLGPLLPTCKLFVTGAAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLRG 134
Query: 497 VPEAIHEAKTGGWVSWAPTWMTGPGLAGATVGIVGFGRIGQAVARRVKAFNTERIIYFNR 676
EA + G W G VGI+G G IG++ A+++ E I+Y NR
Sbjct: 135 AREAEQSLRLG---KWRQNLSLTDDPYGKRVGIIGMGAIGKSFAQKILPLGCE-IVYHNR 190
Query: 677 SH--RPEEKETGAVKVSFDELLTQSDFV 754
+ EEK GA VSFDELL+ SD +
Sbjct: 191 NRLEAEEEKRLGASFVSFDELLSSSDVI 218
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 45.2 bits (102), Expect = 1e-05
Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 3/171 (1%)
Frame = +2
Query: 251 ELLKEVAGVNGIYCSLTDKIDTELLDAAGPSLKVVATISVGHDHIDVAECKKRGVRIGYT 430
+L++++ GV+ I ++ +L+AA SL V+ +G + +D+ +RG+ + +
Sbjct: 90 DLVEKIKGVHAIGIRSKTRLTRRVLEAAD-SLIVIGCFCIGTNQVDLDFAAERGIAVFNS 148
Query: 431 PDVXXXXXXXXXXXXXXXXSRRVPEAIHEAKTGGWVSWAP-TWMTGPGLAGATVGIVGFG 607
P +R+V + E G W + W + G T+GI+G+G
Sbjct: 149 PYANSRSVAELVIGYIISLARQVGDRSLELHRGEWNKVSSGCWE----IRGKTLGIIGYG 204
Query: 608 RIGQAVARRVKAFNTERIIYFNRSHRPEEKETGAVK--VSFDELLTQSDFV 754
IG ++ +A + Y P G+ K S ELL ++DFV
Sbjct: 205 HIGSQLSVLAEAMGLHVVYYDILPIMP----LGSAKQLSSLPELLHRADFV 251
>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 42.7 bits (96), Expect = 6e-05
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 2/172 (1%)
Frame = +2
Query: 245 RAELLKEVAGVNGIYCSLTDKIDTELLDA-AGPSLKVVATISVGHDHIDVAECKKRGVRI 421
+ +L E A V ++ + DK+D + L A K++A G +++D+ G+ +
Sbjct: 37 KTAVLAEKAPVVCVF--VNDKVDADTLKVLAKNGTKLIALRCAGFNNVDLKAAADNGITV 94
Query: 422 GYTPDVXXXXXXXXXXXXXXXXSRRVPEAIHEAKTGGWVSWAPTWMTGPGLAGATVGIVG 601
P +R++ A + + + G L G T+G++G
Sbjct: 95 VRVPAYSPYAVAEYTIGLLLSLNRKIHRAYVRVRED---DFNLNGLLGHDLHGKTIGLLG 151
Query: 602 FGRIGQAVARRVK-AFNTERIIYFNRSHRPEEKETGAVKVSFDELLTQSDFV 754
GRIG VA+ +K F E + + + ++ EK G V E+L ++DF+
Sbjct: 152 TGRIGGLVAKCLKLGFGCEVLAHDIKPNKELEK-FGIQFVEQQEVLAKADFL 202
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 38.7 bits (86), Expect = 0.001
Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 3/166 (1%)
Frame = +2
Query: 266 VAGVNGIYCS-LTDKIDTELLDA-AGPSLKVVATISVGHDHIDVAECKKRGVRIGYTPDV 439
+AG + C + D++D + L A A +K+VA G++++++ + + + + P
Sbjct: 41 LAGKAQVVCVFVNDQVDADTLKALAENGVKLVALRCGGYNNVNLKAASEYKITVVHVPSY 100
Query: 440 XXXXXXXXXXXXXXXXSRRVPEAIHEAKTGGWVSWAPTWMTGPGLAGATVGIVGFGRIGQ 619
+R++ A + + + G + G TVG++G G+IG
Sbjct: 101 SPFAVSEFTVGLLLSLNRKIHRAYVRVRED---DFNIVGLLGCDIHGKTVGVIGTGKIGS 157
Query: 620 AVARRVK-AFNTERIIYFNRSHRPEEKETGAVKVSFDELLTQSDFV 754
VA+ K F + + Y + E G V +E+L ++DF+
Sbjct: 158 NVAKCFKMGFGCDVLAYDINPDKKLE-NYGVQFVEQNEVLKKADFL 202
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.18
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = -2
Query: 600 PTMPTVAPASP-GPVIQVGAHETQPPVLASCIASGTRRDVAKSR-ARVNSAVASVKTSGV 427
P P APA+P + ++ + + ++AS ASG D+ KSR + +VAS KTS
Sbjct: 477 PPAPAPAPAAPVASIAELPQQDGRANLMASIRASGGM-DLLKSRKVSASPSVASTKTSNP 535
Query: 426 YPIRTP 409
P+ P
Sbjct: 536 -PVEAP 540
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 28.7 bits (61), Expect = 0.97
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 587 VGIVGFGRIGQAVARRVKAFNTERIIYFN 673
VGI GFGRIG+ V R T +++ N
Sbjct: 6 VGINGFGRIGRIVLRNALVAKTIQVVAIN 34
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 2.2
Identities = 23/94 (24%), Positives = 47/94 (50%)
Frame = -2
Query: 525 VLASCIASGTRRDVAKSRARVNSAVASVKTSGVYPIRTPLFLHSATSI*SWPTEIVATTF 346
+L+S +S + ++ S + +S +S TS I + + S+++I S PT ++
Sbjct: 579 ILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSI--SSSSTILSSPTPSTSSLM 636
Query: 345 KLGPAASNSSVSILSVKEQ*IPLTPATSFNNSAL 244
+ + S SILS IP++ + S +S++
Sbjct: 637 ISSSSIISGSSSILSSSISTIPISSSLSTYSSSV 670
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 97 SWWYCYCKEHECKRTISNIRDEV--*YAREWST 189
S+ YC C++ E +++I +I +E+ Y + W T
Sbjct: 159 SFCYCSCEQKEWQQSIKSIEEELVEKYQQSWKT 191
>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 555
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 194 LKDQCDVNLWNQPSPVPRAELLKEVAGVNGIYCSLTDKIDTELLDAA 334
+ D C +NLW+ + LL+EVAG N L +K+ T ++ A
Sbjct: 201 ISDVCGMNLWDIQNEKFDIRLLEEVAG-NSKGPDLANKLGTVEINGA 246
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 745 ALGEEFIETDFDSTSFLLFRSMTAIKINDSFCVECFNPSCYCLTYS 608
AL + + F + FR++ AI S+C+E N S + + YS
Sbjct: 642 ALESSRLSSLFKEFDLVSFRTVPAIHCPYSYCMEITNSSGWKIAYS 687
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 269 QLLSITQLSALEKVDSID*HHIDLLEVVLHSLAYQTSSRIFDIV 138
QL+ I Q A++ D + I L +LHSLA T+ +F V
Sbjct: 657 QLVLIDQTKAIDSYDHVP---ISPLIYLLHSLALLTNGTLFSTV 697
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 575 AGATVGIVGFGRIGQAVARRVKAFNTERII 664
+G+TV +VG G +G A + A RII
Sbjct: 193 SGSTVAVVGCGCVGLAAMQGAVAAGASRII 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,889
Number of Sequences: 5004
Number of extensions: 63435
Number of successful extensions: 174
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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