Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H18
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical pr...    69   5e-12
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    46   4e-05
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    32   0.39 
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    32   0.39 
U88172-5|AAB42260.1|  483|Caenorhabditis elegans Hypothetical pr...    32   0.52 
Z49070-2|CAA88870.1|  341|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z48783-3|CAA88697.1|  341|Caenorhabditis elegans Hypothetical pr...    30   2.1  
X52674-1|CAA36900.1|  341|Caenorhabditis elegans gpd-1 protein.        30   2.1  
X52673-1|CAA36899.1|  341|Caenorhabditis elegans gpd-4 protein.        30   2.1  
X04818-1|CAA28504.1|  341|Caenorhabditis elegans glyceraldehyde-...    30   2.1  
Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPas...    29   2.8  
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    29   4.8  
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    29   4.8  
U64862-2|AAZ32793.1|  372|Caenorhabditis elegans Lin-5 (five) in...    29   4.8  
Z73427-4|CAA97802.3|  601|Caenorhabditis elegans Hypothetical pr...    28   6.4  
U58756-6|AAY44007.1|  286|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical
           protein C31C9.2 protein.
          Length = 322

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 1/169 (0%)
 Frame = +2

Query: 251 ELLKEVAGVNGIYCSLTDKIDTELLDAAGPSLKVVATISVGHDHIDVAECKKRGVRIGYT 430
           ELL  +   + +      KI  ELL A+   LK+V     G D+IDV       + +  T
Sbjct: 39  ELLVTLPQHDAVIVRSATKITAELLAASAGKLKLVGRAGTGVDNIDVPAASANKILVMNT 98

Query: 431 PDVXXXXXXXXXXXXXXXXSRRVPEAIHEAKTGGWVSWAPTWMTGPGLAGATVGIVGFGR 610
           P                  SR VP+A    K G    WA     G  + G T+ ++G GR
Sbjct: 99  PQANSRSAAELTCTLILSLSRHVPQAAASMKAG---KWARKDFMGEEVYGRTLAVLGLGR 155

Query: 611 IGQAVARRVKAFNTERIIYFNRSHRPEEKETGAVK-VSFDELLTQSDFV 754
           IG  VA R++AF   ++I F+     E+ E   ++ +S +++  Q+D++
Sbjct: 156 IGSEVAVRLQAFGM-KVIGFDPMVTKEQAEAKNIELLSLEQIWPQADYI 203


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 5/142 (3%)
 Frame = +2

Query: 344 LKVVATISVGHDHIDVAECKKRGVRIGYTPDVXXXXXXXXXXXXXXXXSRRV---PEAIH 514
           LKVV  I  G D+IDV    + G+ + + P                   RR     ++  
Sbjct: 243 LKVVFRIGYGIDNIDVKAATELGIAVCHAPGDYVEDVADSTLSLILDLFRRTYWHAKSYS 302

Query: 515 EA-KTGGWVSWAPTWMTGPGLAGATVGIVGFGRIGQAVARRVKAFNTERIIYFNRSHRPE 691
           E  KT G        +    + G+ +GI+G GR+G AV  R +AF    I Y        
Sbjct: 303 ETRKTIGADQVRENAVGSKKVRGSVLGILGCGRVGTAVGLRARAFGLHIIFYDPFVREGH 362

Query: 692 EKETGAVKV-SFDELLTQSDFV 754
           +K  G  +V + DE +++SD +
Sbjct: 363 DKALGFERVYTMDEFMSRSDCI 384


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
           ATPase protein.
          Length = 2395

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -2

Query: 654 SVLNALTLRATA*PILPNPTMPTVAPASPGPVIQVGAHETQPPVLASCIASGTRRD-VAK 478
           +V+  LT      P  P P   T+ P         G++  QP VL SC    T  +  AK
Sbjct: 145 AVMADLTKEPPPTPAPPPPIQKTMQPIEVKIEDSEGSNTAQPSVLPSCGGGETNVERAAK 204

Query: 477 SRARVNSAVASVKTSGVY 424
             A V + +A ++ +G++
Sbjct: 205 REAHVLARIAELRKNGLW 222


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
           protein Y111B2A.22 protein.
          Length = 2395

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -2

Query: 654 SVLNALTLRATA*PILPNPTMPTVAPASPGPVIQVGAHETQPPVLASCIASGTRRD-VAK 478
           +V+  LT      P  P P   T+ P         G++  QP VL SC    T  +  AK
Sbjct: 145 AVMADLTKEPPPTPAPPPPIQKTMQPIEVKIEDSEGSNTAQPSVLPSCGGGETNVERAAK 204

Query: 477 SRARVNSAVASVKTSGVY 424
             A V + +A ++ +G++
Sbjct: 205 REAHVLARIAELRKNGLW 222


>U88172-5|AAB42260.1|  483|Caenorhabditis elegans Hypothetical
           protein ZK354.8 protein.
          Length = 483

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 615 PILPNPTMPTVAPASPGPVIQVGAHETQPPVLAS 514
           P  P P  P VAP  P P +   A   QPPV+ S
Sbjct: 94  PSDPPPPPPPVAPHQPPPQLATSAQPPQPPVINS 127


>Z49070-2|CAA88870.1|  341|Caenorhabditis elegans Hypothetical
           protein T09F3.3 protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 572 LAGATVGIVGFGRIGQAVARRVKAFNTERIIYFN 673
           ++ A VGI GFGRIG+ V R     +T +++  N
Sbjct: 1   MSKANVGINGFGRIGRLVLRAAVEKDTVQVVAVN 34


>Z48783-3|CAA88697.1|  341|Caenorhabditis elegans Hypothetical
           protein F33H1.2 protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 572 LAGATVGIVGFGRIGQAVARRVKAFNTERIIYFN 673
           ++ A VGI GFGRIG+ V R     +T +++  N
Sbjct: 1   MSKANVGINGFGRIGRLVLRAAVEKDTVQVVAVN 34


>X52674-1|CAA36900.1|  341|Caenorhabditis elegans gpd-1 protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 572 LAGATVGIVGFGRIGQAVARRVKAFNTERIIYFN 673
           ++ A VGI GFGRIG+ V R     +T +++  N
Sbjct: 1   MSKANVGINGFGRIGRLVLRAAVEKDTVQVVAVN 34


>X52673-1|CAA36899.1|  341|Caenorhabditis elegans gpd-4 protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 572 LAGATVGIVGFGRIGQAVARRVKAFNTERIIYFN 673
           ++ A VGI GFGRIG+ V R     +T +++  N
Sbjct: 1   MSKANVGINGFGRIGRLVLRAAVEKDTVQVVAVN 34


>X04818-1|CAA28504.1|  341|Caenorhabditis elegans
           glyceraldehyde-3-phosphate dehydrogenaseprotein.
          Length = 341

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 572 LAGATVGIVGFGRIGQAVARRVKAFNTERIIYFN 673
           ++ A VGI GFGRIG+ V R     +T +++  N
Sbjct: 1   MSKANVGINGFGRIGRLVLRAAVEKDTVQVVAVN 34


>Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical
           protein K11D9.2b protein.
          Length = 1004

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = -2

Query: 540 ETQPPVLASCIASGTRRDVAKSRARVNSAVASVKTSG 430
           E  P V+ +C+A GTRR +AK  A V S + SV+T G
Sbjct: 311 EGLPAVITTCLALGTRR-MAKKNAIVRS-LPSVETLG 345


>Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical
           protein K11D9.2a protein.
          Length = 1059

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = -2

Query: 540 ETQPPVLASCIASGTRRDVAKSRARVNSAVASVKTSG 430
           E  P V+ +C+A GTRR +AK  A V S + SV+T G
Sbjct: 311 EGLPAVITTCLALGTRR-MAKKNAIVRS-LPSVETLG 345


>AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPase
           protein.
          Length = 1059

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = -2

Query: 540 ETQPPVLASCIASGTRRDVAKSRARVNSAVASVKTSG 430
           E  P V+ +C+A GTRR +AK  A V S + SV+T G
Sbjct: 311 EGLPAVITTCLALGTRR-MAKKNAIVRS-LPSVETLG 345


>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 28/104 (26%), Positives = 34/104 (32%), Gaps = 4/104 (3%)
 Frame = -2

Query: 615 PILPNPTMPTVAPASPGPVIQVGAHETQPPVLASCIASG---TRRDVAKSRARVNSAVAS 445
           P  P P  P V PA P P +      T PP+       G   T + V  +         +
Sbjct: 75  PSAPGPIRPVVNPAPPLPTLPTPPPSTLPPITYPRPTVGAPITTQQVLITETTTQPPTTT 134

Query: 444 VKTSGVYPIRTPLFLHSATSI*SWPTEIVATTFK-LGPAASNSS 316
                  P  TP    S T     P   VA T K L P    +S
Sbjct: 135 TTLETPAPESTPSMAPSHTDPTPAPETTVAPTTKYLRPERKQTS 178


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 637 NPSCYCL-TYSPKSN-NANSGTSQSRSCHP 554
           NPS + L T SP S   ANS +S SRSC P
Sbjct: 29  NPSSHALRTLSPVSPPTANSSSSTSRSCSP 58


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 637 NPSCYCL-TYSPKSN-NANSGTSQSRSCHP 554
           NPS + L T SP S   ANS +S SRSC P
Sbjct: 29  NPSSHALRTLSPVSPPTANSSSSTSRSCSP 58


>U64862-2|AAZ32793.1|  372|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform e protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 637 NPSCYCL-TYSPKSN-NANSGTSQSRSCHP 554
           NPS + L T SP S   ANS +S SRSC P
Sbjct: 29  NPSSHALRTLSPVSPPTANSSSSTSRSCSP 58


>Z73427-4|CAA97802.3|  601|Caenorhabditis elegans Hypothetical
           protein F58B3.4 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 83  TSGLFRGGIAIVRNMSAKGRYQIYVTRSDMPESGVQLLKDQCDVNLWNQPSPV 241
           +S  F+G + + +    K +    V  +  PE  VQ LK Q D   WN+   V
Sbjct: 549 SSKKFKGSLLVTKQAEQKSKGSSTVIETKKPEDLVQKLKKQAD--KWNKKKSV 599


>U58756-6|AAY44007.1|  286|Caenorhabditis elegans Hypothetical
           protein F58F9.9 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 613 YSPKSNNANSGTSQSRSCHPSGCP-*NPTT 527
           Y P SNN     S+     PSGCP  NPTT
Sbjct: 134 YKPNSNNTAYVRSRKCLSGPSGCPCVNPTT 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,698,393
Number of Sequences: 27780
Number of extensions: 367011
Number of successful extensions: 1093
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)